Query= MSMg01no273_i01.b1 MSMg01no273_i01.b1 CHROMAT_FILE:
MSMg01no273_i01.b1 PHD_FILE: MSMg01no273_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:53 2005
(319 letters)
>mm_chr3_149526172_149526891
Length = 720
Score = 542 bits (280), Expect = e-158
Identities = 307/316 (97%), Gaps = 1/316 (0%)
Strand = Plus / Plus
Query: 5 gaattcagttttctatcaccattttttt-ctcatgatttctctccagaaagataacagta 63
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagttttctatcaccattttttttctcatgatttctctccagaaagataacagta 264
Query: 64 taaggatatggtgttttcctttttgataataaattgttgtggagttaaattttgagacaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaggatatggtgttttcctttttgataataaattgttgtggagttaaattttgagacaa 324
Query: 124 cagtaacattgatgatgataaatgatgtgagtacccagaacatccaaggacttgggagct 183
|||||||||| ||| |||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 325 cagtaacattcatggtgataaatgatgtgagcacccagatcatccaaggacttgggagct 384
Query: 184 tttaagagaagtacttgtcagtactaaaactagtaaagtttaaaaggagacatttttttc 243
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttaagagaagtactagtcagtattaaaactagtaaagtttaaaaggagacatttttttc 444
Query: 244 tgccatagaacatcaccaaccaaccaatcaagtgaaaggggatgagggaggaactggaga 303
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgccatagaacagcactaaccaaccaatcaagtgaaaggggatgagggaggaactggaga 504
Query: 304 gatgactcactagatg 319
||||||||||||||||
Sbjct: 505 gatgactcactagatg 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space: 220410
Effective search space used: 220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no273_i01.g1 MSMg01no273_i01.g1 CHROMAT_FILE:
MSMg01no273_i01.g1 PHD_FILE: MSMg01no273_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:53 2005
(644 letters)
>mm_chr3_149676461_149677508
Length = 1048
Score = 1089 bits (563), Expect = 0.0
Identities = 625/647 (96%), Gaps = 4/647 (0%)
Strand = Plus / Minus
Query: 1 acacacacaagccgatcatagttagatcgactttaggtcctctgggtgtggtattgaagt 60
||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 847 acacacacaagcccatcacagttagatcaactttaggtcctctgggtgtggtattgaagt 788
Query: 61 ttcacgttctttctttgctggctgttggagaaagtcattcttttttggactgctctttcc 120
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 787 ttcacgttctttctttgctggctgttggagaaagtcattcttttttgggctgctgtttcc 728
Query: 121 tcatctcaatggactccacgcacctgcaaaaaagagttactaaggctgtcaaggttatgc 180
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 727 tcatctcaatggactccacgcacctgaaaaaaagagttgctaaggctgtcaaggttatgc 668
Query: 181 aagt---aaattcacaagggtcatgcttagaatatcatcaacataggagaagtctgttgt 237
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aagtaagaaattcacaagggtcatgcttagaatatcatcaacataggagaagtctgttgt 608
Query: 238 ca-ttttccccaatgaggcacaagacacaattagaatatacatatatttttaacactatt 296
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 catttttccccaatgaggcacaagacacaattagaatatacatatatttttaacactatt 548
Query: 297 tgctgttctttgatttatattgtgagtaaatttttctgcatcaatcatgcttatttctgt 356
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 547 tgctgttctttgatttacattgtgagtaaatttttctgcatcattcatgcttatttctgt 488
Query: 357 acatttatgggcattttgaagtttattgaatgtatataagaatgagcagactgtttcctt 416
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 487 acatttatgggcattttgaagtttatggaatgtatataagaatgagcagactgtttcctt 428
Query: 417 cctgagttaaatatatccttttcctctataatatatttatttgataccaaagggtagtat 476
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 427 cctgggttaaatatatccttttattctataatatatttatttgataccaaagggtagtat 368
Query: 477 aaagttttcgtaggaaagaacatttatggatcccttcttttccactccaaagactcgtga 536
||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 367 aaagtttccttaggaaagaacatttatggatcccttcttttccactccaaagactcttga 308
Query: 537 ctactttggaaatgtgtaagtcttattgcttcctatctttagctccctatatctgctttg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctactttggaaatgtgtaagtcttattgcttcctatctttagctccctatatctgctttg 248
Query: 597 cagtgatcaaattcagtgtaagatgaagagtttcttctcatctatat 643
||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 247 cagtggtcaaattcagtgtaagatgaagagttccttctcatctatat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1048
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1038
Effective search space: 658092
Effective search space used: 658092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
