BAC Information

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BAC

Clone NameMSMg01-273K24
Chromosome3 (Build37)
Map Location 47,313,085 - 47,313,400
singlet/doubletsinglet
Overlap geneLOC100039426
Upstream geneLOC545517, LOC383849, LOC383850
Downstream geneLOC666202, LOC666208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273K24.T7 (MSMg01no273_k24.b1)MSMg01-273K24.TJ (MSMg01no273_k24.g1)
ACCAG412622AG412623
length745747
length of high quality
(start - end)
320 (35 - 354)293 (66 - 358)
definitionCHROMAT_FILE: MSMg01no273_k24.b1 PHD_FILE: MSMg01no273_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:06 2005CHROMAT_FILE: MSMg01no273_k24.g1 PHD_FILE: MSMg01no273_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCTGT
ACTGGGGCATATAAAGTTTGCATGTCCAATGGGCCTCTCTTCCCAGTGAT
GGCCAATATTTCTTTCCTCTTTATATCTCTTTTTGTTTCCTATTCTTTCT
GCCATCATTTAATTTTGACCCGTCTTCTTTTTCTTTGCAAAAATGTAACG
CAGCCCCAAATCCTCTATGGAGCTGAAGATGACTTTGAGTTTCTGATCTT
CCCATTTAATCTCAGTGTGCTGAGAACACAGTCATGTCCCACCATGCCTA
GCTTGAGCCACTAACCACTGAATCACATCCCAGTATCTTTGCTTGTTGCT
TAATTTATCTTTAACCTCTCCCACTCATAGTGTATGGAACATCGTTGTCA
GTTTGTTTTTAATACATGATAACAATCAAGAGCAAGCATAGAAGAACACT
ATTACTTCCAAAGTACTCACTGAGTCCTTTTAAAAATATTATCATAAGGT
CCCAATGGTGTAACTCAGTCAACACTCAGGCCCACATGAAAGGATTTGAG
TTTGCACACCCCAGCATCTACCCTATTGTACTGGCTAGTTTTGTGTAAAC
TTGACACAGACTGCAGTTTTCACAGAGAAAGGAGCTTCAGGTGAGGAAAT
GCTTCCATGAGATACAGCTATAAGGCACTTTCTCAATTAGTGATCAAGGA
TACGCGGGTCAATTGTGGGTGGTGCCATCTCTGGGCTGGTAGTCT
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATAAAAACAA
CACTGAGATTCCACTTCACTCCAGTTAGAATGGCTAAGATCAAAAACTCA
GGTGACAGCAGATGCTGGCGAGAATGTGGAGAAAGGGGAACACTCCTCCA
TTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGC
GGTGCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCTGCAATACCT
CTCCTGGTTTTATATCCACCACACGCCCCAACCGGTAAGAAGAACACATG
CTCCACTATGTTCATAGCAGCCTTGATTGTAATAGTCAGAAGCTGGAAAG
AACCCAGATGCTCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATT
TACACAATGGAATACTACTCAGCTATTTAAAAAATGAATTTATGAAATTC
CTAGACAAATGGATGGACCTGGAGGGTTTCATCCTGAGTGAAATAACCCA
ATCACAAAGGAACTAGCACAATATGTACTCACTGATAAGTGGATATTAGC
CCAGAAACTTAGGATACCCAAGATATAAGATACAACTTGCCAAACGCATG
AAATTCAAGAAGAATCAAGACCAAAGTGTGGACACTTTACCCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_k24.b1 MSMg01no273_k24.b1 CHROMAT_FILE:
MSMg01no273_k24.b1 PHD_FILE: MSMg01no273_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:06 2005
         (320 letters)



>mm_chr3_47312882_47313601
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcctgtactggggcatataaagtttgcatgtccaatgggcctctcttcccagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcctgtactggggcatataaagtttgcatgtccaatgggcctctcttcccagt 263

                                                                       
Query: 64  gatggccaatatttctttcctctttatatctctttttgtttcctattctttctgccatca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gatggccaatatttctttcctctttatatctctttttgtttcctattctttctgccatca 323

                                                                       
Query: 124 tttaattttgacccgtcttctttttctttgcaaaaatgtaacgcagccccaaatcctcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttaattttgacccgtcttctttttctttgcaaaaatgtaacgcagccccaaatcctcta 383

                                                                       
Query: 184 tggagctgaagatgactttgagtttctgatcttcccatttaatctcagtgtgctgagaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggagctgaagatgactttgagtttctgatcttcccatttaatctcagtgtgctgagaac 443

                                                                       
Query: 244 acagtcatgtcccaccatgcctagcttgagccactaaccactgaatcacatcccagtatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acagtcatgtcccaccatgcctagcttgagccactaaccactgaatcacatcccagtatc 503

                           
Query: 304 tttgcttgttgcttaa 319
           ||||||||||||||||
Sbjct: 504 tttgcttgttgcttaa 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)