Query= MSMg01no273_n12.b1 MSMg01no273_n12.b1 CHROMAT_FILE:
MSMg01no273_n12.b1 PHD_FILE: MSMg01no273_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:17 2005
(307 letters)
>mm_chr3_81960288_81960994
Length = 707
Score = 538 bits (278), Expect = e-157
Identities = 299/306 (97%)
Strand = Plus / Minus
Query: 2 gagctacagaactggtgttaatctaacactgtggaagaacaggctggaggtcggaagctg 61
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 507 gagctacagaactggtgttaatccaacactgtggaagaacaggctggaggtcggaagctg 448
Query: 62 tcaagagtgagctacttctctcatgttcttttccaagccacaaagacaaggtatttaggg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcaagagtgagctacttctctcatgttcttttccaagccacaaagacaaggtatttaggg 388
Query: 122 tgaaaacactcaccctgtccccttgctccgtgtggcttttattggtgtgctctgactacc 181
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 387 tgaaaacactcaccctgtccccttggtctgtgtggcttttattggtgtgctctgactacc 328
Query: 182 ttggagtggctagttgtatctactgtctctgcagtcctatctcccagcctgagctcacaa 241
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 327 ttggagtggctagttgtatctactgtctcttcagtcctatctccctgcctgagctcacaa 268
Query: 242 ggcccagagatctaatggatgttgccacctggaccactggctctacagtgatatctttta 301
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 267 ggcccagagatctaagggatgttgccagctggaccactggctctacagtgatatctttta 208
Query: 302 tttttc 307
||||||
Sbjct: 207 tttttc 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space: 208004
Effective search space used: 208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no273_n12.g1 MSMg01no273_n12.g1 CHROMAT_FILE:
MSMg01no273_n12.g1 PHD_FILE: MSMg01no273_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:17 2005
(279 letters)
>mm_chr3_81824394_81825073
Length = 680
Score = 487 bits (252), Expect = e-142
Identities = 273/282 (96%), Gaps = 5/282 (1%)
Strand = Plus / Plus
Query: 1 caaagaattctagtcttccaaagtttaaatcaattattggaaatagttttatatcatctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagaattctagtcttccaaagtttaaatcaattattggaaatagttttatatcatctc 260
Query: 61 cttttggaaatgatttgtgtgaatattattatttcatattactagtgtgtattattttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttggaaatgatttgtgtgaatattattatttcatattactagtgtgtattattttgt 320
Query: 121 ttaaactaaatttgaaaataatataatttatgtatcatcacatatcagttgtagtaaaac 180
|||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 321 ttaaactaaacttgaaaataatataatttatgtatcatcacat--cagttgtaataaaac 378
Query: 181 tattggattcaaatat---atatgctaataatatttactttttgttgtataaaatggaat 237
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 379 tattggattcaaatattatatatgctaataatatttactttttgttgtataaaatgtaat 438
Query: 238 ttctttatgaatttttattacagcaaatgttggcggtcagct 279
||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 439 ttctttatgaatttttattacagcagatgttggcggtcagct 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 680
Length adjustment: 9
Effective length of query: 270
Effective length of database: 671
Effective search space: 181170
Effective search space used: 181170
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
