BAC Information

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BAC

Clone NameMSMg01-274A06
Chromosome3 (Build37)
Map Location 151,183,540 - 151,183,852
singlet/doubletsinglet
Overlap geneEltd1
Upstream genenone
Downstream geneIfi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274A06.T7 (MSMg01no274_a06.b1)MSMg01-274A06.TJ (MSMg01no274_a06.g1)
ACCAG412865AG412866
length719728
length of high quality
(start - end)
316 (44 - 359)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no274_a06.b1 PHD_FILE: MSMg01no274_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:29 2005CHROMAT_FILE: MSMg01no274_a06.g1 PHD_FILE: MSMg01no274_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCCAGGGATTTTCTAATCAGCAGGTGTAATGCTGTCCTCAATGTCAAA
TGATAGAATTTGAATATCTGAAGGAAATCTCTATTCAGTGTGTCCACATG
GTTTATCTACCTGTAGAGGAATGTGGAGTTAGTATGATTGGGTCTTGGAT
TCTGGTTATTCCTCGTCCAGGTCCACTGGGGACAGATCTGGCTGCCTACT
GGTAGAGGAAAACTTCACAACACCACTTTAATTTAGTCTTTTAATTCCTT
AATTACTCATTATTTTTGATATATGATGGCATCAATGTATATTTTATATG
TAGGCACTTATATAACTCCATTCCTATATTGATCCCTCTTATCCATCAGA
GGAATATCCAACCATATTTATATCCAACCCTTCTTCTTAGTTGTTTGCAG
CCATGGAACCTGCAACTCCTTATTGCTTCACTCTTTTCCTAGCGNTTTCT
TTCTCTCATTTTTCTTTCTCTCATTTTTCCTTTGTTCCTTTGCTTCCATC
CTTATTTTCTTCTTTCCTTTGTTCTTTTTTTTTCCTTCTACCTTTTTATG
TTTTGAGAGTGGCACTTCTACTGTAGCCTTGACTGATCTGTANCTGAAAA
GGACTGTGGTGTCCTGATATAAGTGCATTAGTATCTCAAATACTAAGAAT
TAAACTTATGCCTCCGGTA
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGCTCACCATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCA
GCAATACCTTTTTTGTGCACATCCCCACAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGACATTAGCCCTAAACCTAAGATACCCAAGATATAAGATACAATTTCCT
AAACCATGAAACTTCAGAAAAATGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_a06.b1 MSMg01no274_a06.b1 CHROMAT_FILE:
MSMg01no274_a06.b1 PHD_FILE: MSMg01no274_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:29 2005
         (316 letters)



>mm_chr3_151183337_151184052
          Length = 716

 Score =  559 bits (289), Expect = e-164
 Identities = 307/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccagggattttctaatcagcaggtgtaatgctgtcctcaatgtcaaatgatag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 516 ggaattcccagggattttctaatcagcaggtgtaatgctgtcctcaatggcaaatgatag 457

                                                                       
Query: 64  aatttgaatatctgaaggaaatctctattcagtgtgtccacatggtttatctacctgtag 123
            ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 456 catttgaatatctgaaggaaatctctattcagtgagtccacacggtttatctacctgtag 397

                                                                       
Query: 124 aggaatgtggagttagtatgattgggtcttggattctggttattcctcgtccaggtccac 183
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 396 aggaatgtggagttagtatgattgggtcttggattctggttattccttgtccaggtccac 337

                                                                       
Query: 184 tggggacagatctggctgcctactggtagaggaaaacttcacaacaccactttaatttag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tggggacagatctggctgcctactggtagaggaaaacttcacaacaccactttaatttag 277

                                                                       
Query: 244 tcttttaattccttaattactcattatttttgatatatgatggcatcaatgtatatttta 303
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tcttttaattcattaattactcattatttttgatatatgatggcatcaatgtatatttta 217

                        
Query: 304 tatgtaggcactt 316
           |||||||||||||
Sbjct: 216 tatgtaggcactt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)