BAC Information

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BAC

Clone NameMSMg01-274B07
Chromosome3 (Build37)
Map Location 129,900,928 - 129,901,171
singlet/doubletsinglet
Overlap geneCol25a1
Upstream genePitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845
Downstream geneAgxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1, 6720418B01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274B07.T7 (MSMg01no274_b07.b1)MSMg01-274B07.TJ (MSMg01no274_b07.g1)
ACCAG412910AG412911
length735728
length of high quality
(start - end)
---236 (123 - 358)
definitionCHROMAT_FILE: MSMg01no274_b07.b1 PHD_FILE: MSMg01no274_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:34 2005CHROMAT_FILE: MSMg01no274_b07.g1 PHD_FILE: MSMg01no274_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTTTTAATTACCCTAACCAGAGAGACAAGGATTAAGATTTGTTTTT
CTTTTGCTGAACTTGTATTTCCCACTCTTAAATTCTTATCTGAAGTCAAG
AAAGTATAATAAAATGTCATCCTGTACCTTCTTTAAGGTGAAAACACAAG
AACGTGGCATGGCCATGTCACTGATTTCTTGTCCTGGTCGAATTTCCTGT
TGACTTGACACAAGCTGAAATCATCTGAGAAGAGGGGAGCTCGGTTGGCA
TTTTCTGATATTCAGAGGGAAGGGTAGTTACTGATACACAGGTAAACTCT
AATTGAAACAGACCGCTGAAGTCACGAAAGATGTTTGTTTTGTGAGACAC
ATAGACCCAGCTTCTTGTTTTATTACTTGGCTGGCTCAGACAAGTCATCT
CAGAGAAAGGCCTGATGAGAACAGAAAAGAAAATTTTATAAAGGGGGAGG
GGATTGGAGAGATGGCTCAGCAGTCAAGAGCACTATGCTGCTCTTCCAGA
GGTCCTGAGATCTATTCCCAGCTACCACTTGGTATCTCACAACCATCTGT
AATGGGATCTGATGCCCTCTTCTGTTGTCGCTGAAGGCAGCTACTGTGTA
CTCATATTAATAATATTGTTTAGATCATAGAGAATATTAGTGAGGGGGTT
ATGATCCACCCCAGCGGCTGTTGCGAGGTCTCACT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTTGACTGAGGCTTCGTGCTCTCATGGAA
GAGGCCTGAGGGAATTACCCTCTCCCCTCATATAAGGGGGGGCCCTTGAG
GATGAGGGAACTTACAAGGCAGCCTCTGGAATCTTTGAAAATTTAATTCT
ATAAGCAGCATAGTTTGTGGTATTTTTTGTTGTATTAGGAAAATGTAAGA
TGTTTAATTTTTTTATTTTTTTGGTCAAGATTAATCCTCATTTAGGGAAA
ATTAATGTCATGTTTAAGTTCTCTAATTCTTCATAAATATTAAGGGAAAC
TAGACAGCTCTATTGTTTTCCACCCCCCCTCATTGTAACTACATTCTTAA
TGGAGGGAAGTTTCTCCCGACTAGACAAAAATAAAATCTTAGTAGCATAT
TATACATTTTCAAAAGAAATCTACTTCTCATATATTTAATAGCATTATTT
AGTTCTTTAGAATACCGCAGAAGTTGGTAAAACGTGCTTGAACGCTATGG
ATAAGCGTTTTACAGGAAAAACATAGAAGATATTTCCCCCAGGAAATTAG
AGGACGGTGTTCAATAAAATCAATAGCTTAAGGCTAGAAATTATCTCTGA
TGCTGCCAAGGCTCTCTTATTTCAGGCTATGAATTCAGCCTATAGAAAAT
GCGAATGCTATATAGGATGCAGTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_b07.g1 MSMg01no274_b07.g1 CHROMAT_FILE:
MSMg01no274_b07.g1 PHD_FILE: MSMg01no274_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:34 2005
         (236 letters)



>mm_chr3_129900736_129901371
          Length = 636

 Score =  414 bits (214), Expect = e-120
 Identities = 233/244 (95%), Gaps = 8/244 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccctcatataagggggggcccttgaggatgagggaacttacaaggcag--------cc 52
           ||||||||||||||||||||||||||||||||||||||||||||||||||        ||
Sbjct: 193 tcccctcatataagggggggcccttgaggatgagggaacttacaaggcaggccgtaagcc 252

                                                                       
Query: 53  tctggaatctttgaaaatttaattctataagcagcatagtttgtggtattttttgttgta 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tctggaatctttgaaaatttaattctataagcagcatagtttgtggtattttttgttgta 312

                                                                       
Query: 113 ttaggaaaatgtaagatgtttaatttttttatttttttggtcaagattaatcctcattta 172
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 313 ttaggaaaatgtaagatgtttaatatttttatttttttggtcaagattagtcctcattta 372

                                                                       
Query: 173 gggaaaattaatgtcatgtttaagttctctaattcttcataaatattaagggaaactaga 232
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 373 gggaaaattaatgtcatgtttaagttctcaaattcttcataaatattaagggaaactaga 432

               
Query: 233 cagc 236
           ||||
Sbjct: 433 cagc 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)