BAC Information

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BAC

Clone NameMSMg01-274C21
Chromosome3 (Build37)
Map Location 59,345,044 - 59,345,490
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330
Downstream geneEG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274C21.T7 (MSMg01no274_c21.b1)MSMg01-274C21.TJ (MSMg01no274_c21.g1)
ACCAG412984AG412985
length759752
length of high quality
(start - end)		658 (37 - 694)653 (66 - 718)
definitionCHROMAT_FILE: MSMg01no274_c21.b1 PHD_FILE: MSMg01no274_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:41 2005CHROMAT_FILE: MSMg01no274_c21.g1 PHD_FILE: MSMg01no274_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:41 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTA
TTTATTTCCCTACCCATTTTTAATGGGGTTATTTGATTTTCTGGAGTCCA
TCTTCTTGAGTTCTTTACATATATATTGGATATTAGTCACCTATCAGATT
TAGGATTGGTAAATATCCTTTCCTAATCCTCTCATAGCTTTAAGTCTTAT
TGACAGTGTCTTTTTTCTTACACAAGCTTTGCAATTTTATGAGGTCCCAT
TTATAGATTCTTGATCTTACAGCACAAGCCATTACTGTTCTGTTCAGGAA
TTTTTCCTCTGTGCCCATATCTTCGAGGCTTTACCCACTTTGTCCTCTAT
AAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGACT
TGTCCTTAGGACAAGGAGATAAGAATGGATCAATTCTCATTCTTCTAAGT
GATGACCGCCAGTTGTACCAGCACCATTTGTTGAAAATGTTGTCTTTTTT
CCACTGGATGTTTTTAACTCCCTTGTCAAAGATCAAGTGACCATAGGTGT
GTGGGTTCATTTCTGGGTCTTCAATTCTATTCCCTTGGTCTACTTGTCTG
TCGCTGTACCAGTACCAAGCAGATTTAATCACAATTGCTCGGTAGTACAG
CTTTAGTTTAGGCATGGCAATTCCACCAGAGATTCTTTTATTGTTGAGAA
GAGTTTTTGCTATCCTAGGTTTTTGTTATTCCAGGTGAATCTGCAAATTT
CCTTTTCTA

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGCTGTGCCCAACCATAACTGCCTTAAATTTGTTT
TTAGGCTTCTTTTTTTTTTTTCTTTCCAGTTGCTTGATTGGAAGTCATCT
CTTTTTTTAAAGGTTGCCATGTGAACCCTTTTACTTTAAGAGGCAATTGA
GATATCTCACATGGCCTCCATTTTCCCCTCAGGCTTGTCTTTTGTGCAGA
AAATGTAAACCCTTGATTTAAGGGACCATGTGATTGGTTAGGCTATCTAA
TCTAGCCACCTGGTCTGAAGGCCCCTTGTTTGAAAATTTCATCTCACCTA
CAAAATTTCTCCTCAGAGTTCTAAGCTTATTGTTTAACTGACTATATCAG
ATAATGTGTATCTCCCAGTGACTGGGAACCTTGAGGGTCACCTTAGAATT
CTATTTACTCCATGGTTTTTAACTTTGTCAGCAGTTGTGAGTTTGTTGGG
GATTCCTCTGTGTTTATACTGCTTGCAGTACACTGAGATACTGCTGTGTG
GTTTGGTGTCCTCTCTCAGTTTGCACCAGCTCACATTCAATCTCTTCTAG
CACAGAACGCCCCTCCACCAGAGCAACCCCTCTCCCCAACCAGTTCTCTC
TTGTGCTCATGAGAGTCATCTGGATACACTGGAGATCAGGGCAGGAAAAC
ATTTCTCAGGCTTTGTTGGCTTTGACATTTATATTTTTCTCTGATACTGT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_c21.g1 MSMg01no274_c21.g1 CHROMAT_FILE:
MSMg01no274_c21.g1 PHD_FILE: MSMg01no274_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:41 2005
         (653 letters)



>mm_chr3_59344436_59345490
          Length = 1055

 Score =  555 bits (287), Expect = e-162
 Identities = 407/453 (89%), Gaps = 18/453 (3%)
 Strand = Plus / Minus

                                                                        
Query: 207  gggaccatgtgattggttaggctatctaatctagccacctggtctgaaggccccttgttt 266
            ||||||| ||||||||||||| |||||||||||| |||||| |||||||||||||||| |
Sbjct: 1055 gggaccacgtgattggttagggtatctaatctagtcacctgatctgaaggccccttgtct 996

                                                                        
Query: 267  gaaaatttcatctcacctacaaaatttctcctcagagttctaagcttattgtttaactga 326
            ||||||||||| |||| |||| |||||||||||||||| ||||||||||| ||||| |||
Sbjct: 995  gaaaatttcatttcacttacataatttctcctcagagtactaagcttattatttaattga 936

                                                                        
Query: 327  ctatatcagataatgtgtatctcccagtgactgggaaccttgagggtcaccttagaattc 386
            |||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 935  ctatgtcagataatgtggatctcccagtgactgggaaccttgaaggtcaccttagaattc 876

                                                                        
Query: 387  tatttactccatggtttttaactttgt-----cagcagttgtgagtttgttgggg--att 439
            ||||||||||||| |||||| ||||||     |||||||||||| |||  |||||  |||
Sbjct: 875  tatttactccatgattttta-ctttgttttgtcagcagttgtgaattt--tggggggatt 819

                                                                        
Query: 440  cctctgtgtttatactgcttgcagtacactgagatactgctgtgtggtttggtgtcctct 499
            |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 818  cctctgtgtttatactgcttgcagtacactgagatactgcagtttggtttggtgtcctct 759

                                                                        
Query: 500  ctcagtttgcaccagctcacattcaatctcttctagcacagaac---gcccctccacc-a 555
            ||||||||||||||||||||||||| ||||||| ||||||  ||   ||||||| ||| |
Sbjct: 758  ctcagtttgcaccagctcacattcagtctcttccagcaca--acaaggcccctc-accca 702

                                                                        
Query: 556  gagcaac-ccctctccccaaccagttctctcttgtgctcatgagagtcatctggatacac 614
            || |||  |||||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct: 701  gaacaatgccctctccccaaccagttctctcttgtgttcaggagagtcacctggatacac 642

                                             
Query: 615  tggagatcagggcaggaaaacatttctcaggct 647
             |||||||| ||||||||||||| |||||||||
Sbjct: 641  aggagatcaaggcaggaaaacatctctcaggct 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1055
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1045
Effective search space:   671935
Effective search space used:   671935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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