BAC Information

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BAC

Clone NameMSMg01-274G19
Chromosome3 (Build37)
Map Location 19,117,729 - 19,118,260
singlet/doubletsinglet
Overlap geneMtfr1
Upstream geneCyp7b1, LOC622921, LOC100040153, Armc1
Downstream genePde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274G19.T7 (MSMg01no274_g19.b1)MSMg01-274G19.TJ (MSMg01no274_g19.g1)
ACCAG413154AG413155
length759758
length of high quality
(start - end)
694 (64 - 757)692 (67 - 758)
definitionCHROMAT_FILE: MSMg01no274_g19.b1 PHD_FILE: MSMg01no274_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:57 2005CHROMAT_FILE: MSMg01no274_g19.g1 PHD_FILE: MSMg01no274_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCT
TTCTTTCTCTCCTTGGCTATTGTGTCGATATGCAAACTTCTTTTTCAGAG
CCTCTGCTATTAAGCCCGCATGGTCAGTATCCGCTGGCCTGGGTTTTACA
TCTTTCTCTGACCTTTGAGAAAGGAGCAGAAACCAAGGGGACAGGTCAAT
ATGTGGATGTCCTTCAGAGGTTCTCTGTGGACAACAAACGGTGACTAAGC
CACTGCTAGTAGTAGGAGGGACACTTGGACTTTAGAGCTCAACATGAGAG
TGCAGAGTCAGATAAAGGGCCACTTAGGACAAGTCAGGGCTGCATCTTCC
GGAAGTACCCAGTGATTCCAGGAGAGCCTGGGGGCATGCATCCTCATGAG
ATAGCTCAAGTGAGGGTGCCAGGCACCAAGACGGATGACCTCAGTTCAAT
CCCCAGGACTCGCACTGAAGGCAAGGATTCAATCACAAGTCGTCTTCTGA
CCTTCCCACACATACTGAACCTTTTCTTAAAACAGGTAACCTTTTTAAGA
AATGAGTTGGGCGTTAGTGGTCCATGCCTTGAATCCCAGCACTCTGGAAG
CAGAGGCAGGTGGATCTCTGACTGTGAGGAAACAGAGTGAGTTTCCAGGA
AAGGCAGGGGCTATACAGGAAAAAAAAAAAAAAAAAAAAAAAAACTGTCT
GGGGAATAAAAAACCAAAAAAACAAATGAGTCCACACAAGAGGATGACAC
TTGGTGGAA
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGACCAATTTCCCTTATGAATATCGATGCAAAA
ATACTCAATACAATCCTTCCAAACTGAATCCAAGAACACATCAAAACGAT
CATCCATCATGATCAAGTAGGCTTCATCCCAGGGATGCAGGGATGGTTTC
ACATACAAAAATCTATCAACGTAATCCACTATATAAACAAACTCAAAGAC
AAAAATCACATGATCGTCTCTTTAGATGCTGAGAAAGCATTTGACAAAAT
CCAACACCCCTTCATGATAAAAGTCATGGAAAGGTCAGGAATTCAAGGTC
AATACCTAAACATAATAAAAGCAATGTACAGCTAAGCAGTAACCAACATC
AAACTAAATGGAGAGAAAGTCGAAGCAATCTCACTAAAATCAGGGACTAG
ACAAGGCTGCCCACTTTCTCCCTACTTATTCAATATAGTACTTGAAGTCC
TAGCCAGAGCAATTTGACAATAGAAGGAGATCAAGGGGATACAAATTGGA
AAGGAAGAAGTCAAAATATCACTATTTGCAGATGATATGAGAGTATATAT
AAGTGACCCTAAAAATTCCACCAGAGAACTCCTGAACCTGATAAACAGCT
TCAGTGCTGTAGCTAGATATAAAATTAACCCAAACAAATCAGTGGCCTTT
ATCTACACAAAGGATAAACAGGATGAGAAAGAAATTAGGGAAACAACACC
CTTCACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_g19.b1 MSMg01no274_g19.b1 CHROMAT_FILE:
MSMg01no274_g19.b1 PHD_FILE: MSMg01no274_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:57 2005
         (694 letters)



>mm_chr3_19117729_19118822
          Length = 1094

 Score =  959 bits (496), Expect = 0.0
 Identities = 522/532 (98%), Gaps = 3/532 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggctattgtgtcgatatgcaaacttctttttcagagcctctgctattaagcccgcatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct: 532 tggctattgtgtcgatatgcaaacttctttttcagagcctctgctatgaaggcagcatgg 473

                                                                       
Query: 61  tcagtatccgctggcctgggttttacatctttctctgacctttgagaaaggagcagaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tcagtatccgctggcctgggttttacatctttctctgacctttgagaaaggagcagaaac 413

                                                                       
Query: 121 caaggggacaggtcaatatgtggatgtccttcagaggttctctgtggacaacaaacggtg 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 412 caaggggacaggtcaatatgtggatgtccttcagagggtctctgtggacaacaaacggtg 353

                                                                       
Query: 181 actaagccactgctagtagtaggagggacacttggactttagagctcaacatgagagtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 actaagccactgctagtagtaggagggacacttggactttagagctcaacatgagagtgc 293

                                                                       
Query: 241 agagtcagataaagggccacttaggacaagtcagggctgcatcttccggaagtacccagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agagtcagataaagggccacttaggacaagtcagggctgcatcttccggaagtacccagt 233

                                                                       
Query: 301 gattccaggagagcctgggggcatgcatcctcatgagatagctcaa---gtgagggtgcc 357
           |||||||||||||||||||||||||||||||| ||||| |||||||   |||||||||||
Sbjct: 232 gattccaggagagcctgggggcatgcatcctcttgagagagctcaacaagtgagggtgcc 173

                                                                       
Query: 358 aggcaccaagacggatgacctcagttcaatccccaggactcgcactgaaggcaaggattc 417
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 172 aggcaccaagacggatgacctcagttcaatccccaggactcacactgaaggcaaggattc 113

                                                                       
Query: 418 aatcacaagtcgtcttctgaccttcccacacatactgaaccttttcttaaaacaggtaac 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 aatcacaagtcgtcttctgaccttcccacacatactgaaccttttcttaaaacaggtaac 53

                                                               
Query: 478 ctttttaagaaatgagttgggcgttagtggtccatgccttgaatcccagcac 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  ctttttaagaaatgagttgggcgttagtggtccatgccttgaatcccagcac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)