BAC Information

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BAC

Clone NameMSMg01-274H02
Chromosome3 (Build37)
Map Location 128,832,662 - 128,832,949
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668828, LOC100043393, EG668831
Downstream genePitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274H02.T7 (MSMg01no274_h02.b1)MSMg01-274H02.TJ (MSMg01no274_h02.g1)
ACCAG413167AG413168
length730734
length of high quality
(start - end)
236 (123 - 358)290 (71 - 360)
definitionCHROMAT_FILE: MSMg01no274_h02.b1 PHD_FILE: MSMg01no274_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:59 2005CHROMAT_FILE: MSMg01no274_h02.g1 PHD_FILE: MSMg01no274_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTCCAATGTACCAAATCCAAATCCAATCAAAAATCAGTGACTGATTACCT
CTATGCCATCCATGCCACCCTTGTACCAGTAGCACACCATCTTGCCTGGA
AGGCTTGTTTTGTATTATACACTATGGGATTAACAACATTGATGACTTTG
TCCTCCAGCATGCTACATGGAACTTTCTAGCACCACAAAAGCTAACAAAG
AGAATGCTGCCAGTTCAGTTCCCTCATGATTTCACTGTGCCCTGCAACCA
AAGTGTGTTGTGTCTTCATTAATGGGATTTCGTCATTTAGTTATGAGAGC
AACAGCTTTTCCATGCTTTCCNGTCTGGCCTTGAGATTTAAATCAGAATA
CACAAGACCTGATTCATACCCTGACATAAAGACTACAGAAACTGGGATCA
TAAATGTTTCCTGACACTCCTACAAAGAATCTTGAAGAACAAATGCATAA
AGAAAGACAAATACAATGTGCATTAAAAATCCTAAATTTAATGAACCAAC
CAGTAACCCCCCCCCCCCAGAGCTACCTGGGACTAAACCACCAAACAAAG
AGTACATATGGAGGGATCCCTGTCTCCCGCCACATATGTAGCACAGGATG
ACCTTGTTGGCCATCAATGCTAGGAGAGCCCCTTGTTCCTGTGAAGGCTC
GACGCCCCAATGTACGGTAATGCCAGGATT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTGTATATGTGTTTTTGCATGTGCTTG
TGTGTGTTAGGTGCACAGCCCGGTGTGGCCATGCATGGAGAGACCCAAGT
TCAATGTTAGACGTCAGAAGCTTTCTCTATCACGTTCTACCCTATTGAGA
CAAGGTCTCTCTGTGAATCTCGCCAGCTTTATTCAAGGAATAGCCTGTGC
ACCATTACCCTGGTGTGAAACAGTTGTGCCCTTGAGGACCACCAAGGCTT
CCTAGGCCAAAGTAGGATGTAAGTCAGGAGTTAAGGTGCTAGAAGCTCAC
AGTCCCACTTATTTCTCACTGCCCCCCACCCCCGATTGGGAAGGCAACTC
TGGAAGAATTATAGTTGGAAGACAAGGCAGAACTCCTATTTAGTAAGGCA
GGATGGAGAACATATAGCATTGAGGGCCCCCATCAAGGGTTTCCTGAGCA
GAGGCACAGCATGCTCAAGTCAGCCCAGGTGAGCTCTCCCAGAGAGGCCA
GGTGCCTCTGATTTCAGCCACTTTCCCATATAGTTTCAGTGCGTACTTGC
TTAGGTGAATAAATATAAGGAGGTATATATACCACGACTGGAGTTCCCTG
CAGGCACCATAACAGGGGCTTTTCTGGAAGCTTCTGCCCTAGAATAAAAG
TCATAACTGCTTCTTTTGAGATTTTGTTTTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_h02.g1 MSMg01no274_h02.g1 CHROMAT_FILE:
MSMg01no274_h02.g1 PHD_FILE: MSMg01no274_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:59 2005
         (290 letters)



>mm_chr3_128832312_128833001
          Length = 690

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtgtatatgtgtttttgcatgtgcttgtgtgtgttaggtgcacagcccggtgtggcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 638 tttgtgtatatgtgtttttgcatgtgcttgtgtgtgttaggtgcacaggcaggtgtggcc 579

                                                                       
Query: 61  atgcatggagagacccaagttcaatgttagacgtcagaagctttctctatcacgttctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atgcatggagagacccaagttcaatgttagacgtcagaagctttctctatcacgttctac 519

                                                                       
Query: 121 cctattgagacaaggtctctctgtgaatctcgccagctttattcaaggaatagcctgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cctattgagacaaggtctctctgtgaatctcgccagctttattcaaggaatagcctgtgc 459

                                                                       
Query: 181 accattaccctggtgtgaaacagttgtgcccttgaggaccaccaaggcttcctaggccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 accattaccctggtgtgaaacagttgtgcccttgaggaccaccaaggcttcctaggccaa 399

                                                           
Query: 241 agtaggatgtaagtcaggagttaaggtgctagaagctcacagtcccac 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agtaggatgtaagtcaggagttaaggtgctagaagctcacagtcccac 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)