Query= MSMg01no274_h19.b1 MSMg01no274_h19.b1 CHROMAT_FILE:
MSMg01no274_h19.b1 PHD_FILE: MSMg01no274_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:02 2005
(445 letters)
>mm_chr3_116247535_116248379
Length = 845
Score = 723 bits (374), Expect = 0.0
Identities = 422/442 (95%), Gaps = 9/442 (2%)
Strand = Plus / Minus
Query: 1 tgtgaacaggaaattatctgaggccacaggattgaaagcaaacatttttttctccgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 482 tgtgaacaggaaattatctgaggccacaggattgaaagcaaacatttttttctaagtttt 423
Query: 61 taaaaacaagctacatttaattaggaaggattaagatgaaaataaacagtccactgtatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 taaaaacaagctacatttaattaggaaggattaagatgaaaataaacagtccactgtatt 363
Query: 121 aggcacactgaagggctttgacccgatccctacactacctaagcgcatgaaccctttgcc 180
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct: 362 aggcacactgaagggctttgacccgatccctatactacctaagcgcatgaacccttggtc 303
Query: 181 tctgtgtttcggtggtgctgtgtcagcactaaccactgagcaaccgtctcgactctccct 240
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 302 tctgtgttttggtggtgctgtgtcagcactaaccactgagcaaccgtcttgactctccct 243
Query: 241 aacctgactactagctgaggattgctaaggtaagaagaagtg------gcaa--aataca 292
||||||||||| |||||||||||||||||||||| ||||||| | || |||||
Sbjct: 242 aacctgactacgagctgaggattgctaaggtaaggagaagtgaatataggaattaatacg 183
Query: 293 gcaagaattttgtcttaagacactttcactccaaactgaagacctcactcaacctggatc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gcaagaattttgtcttaagacactttcactccaaactgaagacctcactcaacctggatc 123
Query: 353 taaatgtattacttaaaaaaaaaaaattatagccgggcatggtggtgcacgtctttaatc 412
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 122 taaatgtattacttaaaaaaaaaaa-ttatagccgggcatggtggtgcacgtctttaatc 64
Query: 413 ccagcccttgggaggcagaggc 434
||||||||||||||||||||||
Sbjct: 63 ccagcccttgggaggcagaggc 42
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no274_h19.g1 MSMg01no274_h19.g1 CHROMAT_FILE:
MSMg01no274_h19.g1 PHD_FILE: MSMg01no274_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:02 2005
(286 letters)
>mm_chr3_116102307_116102992
Length = 686
Score = 522 bits (270), Expect = e-153
Identities = 282/286 (98%)
Strand = Plus / Plus
Query: 1 acttacaagcctgtgcatctctgaatgcatacaaaacgtccacgtctacccttacaagct 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 acttacaagcctgtgcatctctgaatgcatacaaaacgtccacgtctagccttacaagct 260
Query: 61 cgaaatgcacttgatgccgtgagttacagcccctctacctctacacggactgtctccaga 120
|||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 261 cgaaatgcgcttgatgccgtgagttacagccccactacctctacaaggactgtctccaga 320
Query: 121 aagtagctcgcttttgtgctcctcagtcccttcaacctgagacagaagaggactgtgtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtagctcgcttttgtgctcctcagtcccttcaacctgagacagaagaggactgtgtga 380
Query: 181 ggagatcgtggcgtgtttttgtacttatagaaagagggtgtctgtcgctacatcaaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagatcgtggcgtgtttttgtacttatagaaagagggtgtctgtcgctacatcaaaaga 440
Query: 241 gttcttgtgtactacgacctgagagtgcggcggctgcctgggttcc 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcttgtgtactacgacctgagagtgcggcggctgcctgggttcc 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
