MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-274N04
Chromosome	3 (Build37)
Map Location	112,934,628 - 112,934,915
singlet/doublet	singlet
Overlap gene	none
Upstream gene	EG229746, LOC668717, Utp14B-ps, EG433643
Downstream gene	OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3, Col11a1
Link	Open Mouse BAC browser

Click to get alignment info.

name	EG229746 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229746 MGI:3646906
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 593 ESTs, 1 Protein

name	LOC668717 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668717
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Utp14B-ps (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:383905
definition	gene_synonym : Tjsd-ps note : truncated in juvenile spermatogonial depletion pseudogene pseudo : _no_value

name	EG433643 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433643 MGI:3644344
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 26 ESTs, 9 Proteins

name	OTTMUSG00000022462 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545562 MGI:3705852
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 1718 ESTs, 21 Proteins

name	LOC668723 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668723
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 16 Proteins pseudo : _no_value

name	Amy2-2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109959 MGI:104547
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Amy2-1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109960 MGI:104548
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043684 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043684
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 2328 ESTs, 22 Proteins

name	LOC100043686 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043686
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 2327 ESTs, 23 Proteins

name	LOC100043688 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043688
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 2325 ESTs, 23 Proteins

name	LOC100043207 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043207
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 846 ESTs, 16 Proteins pseudo : _no_value

name	Amy1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11722 MGI:88019
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnpc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67225 MGI:1914475
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Col11a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12814 MGI:88446
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG229746 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369867 GeneID:229746 MGI:3646906
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 593 ESTs, 1 Protein product : predicted gene, EG229746 transcript_id : XM_124146.6

name	EG433643 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369868 GeneID:433643 MGI:3644344
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 26 ESTs, 9 Proteins product : predicted gene, EG433643 transcript_id : XM_485297.4

name	OTTMUSG00000022462 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251447 GeneID:545562 MGI:3705852
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 1718 ESTs, 21 Proteins product : predicted gene, OTTMUSG00000022462 transcript_id : XM_001481336.1

name	Amy2-2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142356897 GeneID:109959 MGI:104547
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amylase 2-2, pancreatic transcript_id : NM_001042711.2

name	Amy2-1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111607470 GeneID:109960 MGI:104548
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amylase 2-1, pancreatic transcript_id : NM_001042712.1

name	LOC100043684 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251449 GeneID:100043684
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 2328 ESTs, 22 Proteins product : similar to Amylase 2, pancreatic transcript_id : XM_001480957.1

name	LOC100043686 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251451 GeneID:100043686
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 2327 ESTs, 23 Proteins product : similar to Amylase 2, pancreatic transcript_id : XM_001480959.1

name	LOC100043688 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251453 GeneID:100043688
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 2325 ESTs, 23 Proteins product : similar to Amylase 2, pancreatic transcript_id : XM_001480963.1

name	Amy1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6996908 GeneID:11722 MGI:88019
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amylase 1, salivary transcript_id : NM_007446.1

name	Rnpc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84662759 GeneID:67225 MGI:1914475
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA-binding region (RNP1, RRM) containing 3 transcript_id : NM_026043.3

name	Rnpc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84662757 GeneID:67225 MGI:1914475
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA-binding region (RNP1, RRM) containing 3 transcript_id : NM_001038696.1

name	Col11a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487345 GeneID:12814 MGI:88446
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type XI, alpha 1 transcript_id : NM_007729.2

name	EG229746 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51708365 GeneID:229746 MGI:3646906
definition	codon_start : 1 product : similar to ribosomal protein S4, X-linked protein_id : XP_124146.3

name	EG433643 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82890886 GeneID:433643 MGI:3644344
definition	codon_start : 1 product : similar to OB-RGRP protein_id : XP_485297.3

name	OTTMUSG00000022462 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251448 GeneID:545562 MGI:3705852
definition	codon_start : 1 exception : unclassified translation discrepancy note : overriding stop codons product : similar to amylase 2, pancreatic protein_id : XP_001481386.1 transl_except : (pos:complement(112955011..112955013),aa:OTHER) transl_except : (pos:complement(112954939..112954941),aa:OTHER) transl_except : (pos:complement(112954139..112954141),aa:OTHER) transl_except : (pos:complement(112953972..112953974),aa:OTHER) transl_except : (pos:complement(112952634..112952636),aa:OTHER) transl_except : (pos:complement(112952622..112952624),aa:OTHER) transl_except : (pos:complement(112952559..112952561),aa:OTHER) transl_except : (pos:complement(112952423..112952425),aa:OTHER) transl_except : (pos:complement(112952372..112952374),aa:OTHER) transl_except : (pos:complement(112950697..112950699),aa:OTHER)

name	Amy2-1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111607471 GeneID:109960 MGI:104548
definition	GO_function : GO:0004556 - alpha-amylase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA] codon_start : 1 product : amylase 2-1, pancreatic protein_id : NP_001036177.1

name	Amy2-2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111607467 GeneID:109959 MGI:104547
definition	GO_function : GO:0004556 - alpha-amylase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA] codon_start : 1 product : amylase 2-2, pancreatic protein_id : NP_001036176.1

name	LOC100043684 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251450 GeneID:100043684
definition	codon_start : 1 product : similar to Amylase 2, pancreatic protein_id : XP_001481007.1

name	LOC100043686 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251452 GeneID:100043686
definition	codon_start : 1 product : similar to Amylase 2, pancreatic protein_id : XP_001481009.1

name	LOC100043688 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251454 GeneID:100043688
definition	codon_start : 1 product : similar to Amylase 2, pancreatic protein_id : XP_001481013.1

name	Amy1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6996909 CCDS:CCDS17776.1 GeneID:11722 MGI:88019
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA] GO_function : GO:0004556 - alpha-amylase activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : amylase 1, salivary protein_id : NP_031472.1

name	Rnpc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84662758 CCDS:CCDS17777.1 GeneID:67225 MGI:1914475
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : RNA-binding region (RNP1, RRM) containing 3 protein_id : NP_001033785.1

name	Rnpc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981077 CCDS:CCDS17777.1 GeneID:67225 MGI:1914475
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : RNA-binding region (RNP1, RRM) containing 3 protein_id : NP_080319.2

name	Col11a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487346 CCDS:CCDS17778.1 GeneID:12814 MGI:88446
definition	GO_component : GO:0005581 - collagen [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005201 - extracellular matrix structural constituent [Evidence IEA]; GO:0030020 - extracellular matrix structural constituent conferring tensile strength [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0001502 - cartilage condensation [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0030199 - collagen fibril organization [Evidence IMP]; GO:0006817 - phosphate transport [Evidence IEA]; GO:0006029 - proteoglycan metabolism [Evidence IMP] codon_start : 1 note : pro-alpha1(XI) collagen; chondrodysplasia; a1(XI) collagen product : procollagen, type XI, alpha 1 protein_id : NP_031755.2

name	LOC668717 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668717
definition	number : 2 pseudo : _no_value

name	LOC668717 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668717
definition	number : 1 pseudo : _no_value

name	LOC668723 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251373 GeneID:668723
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 16 Proteins product : similar to pancreatic alpha-amylase pseudo : _no_value transcript_id : XR_034359.1

name	LOC100043207 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251374 GeneID:100043207
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 846 ESTs, 16 Proteins product : similar to amylase 2-2, pancreatic pseudo : _no_value transcript_id : XR_034362.1

clone name	MSMg01-371N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480D24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-065K13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-104A13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-048M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051L15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-083G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545D23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-263A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103E15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-493E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046P11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-048E03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-263A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-305M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299D18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-180C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-210J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200M24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-157B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050A02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345M02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-309M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282K17
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-274N04.T7 (MSMg01no274_n04.b1)	MSMg01-274N04.TJ (MSMg01no274_n04.g1)
ACC	AG413444	AG413445
length	742	734
length of high quality (start - end)	236 (124 - 359)	292 (69 - 360)
definition	CHROMAT_FILE: MSMg01no274_n04.b1 PHD_FILE: MSMg01no274_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:26 2005	CHROMAT_FILE: MSMg01no274_n04.g1 PHD_FILE: MSMg01no274_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:26 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT CACCTGAGGAACACCAAATGGCTGAGAAACACCTGAAAAAATGTTCAGCA TCCTTAATCATCTGGTAAACCCAAACCAAAACAACCCTGAGATTCCATCT CACACCAGTTAGAATGGCTAAGATCAAAAATTCAGGTGACAGTAGATGCT GGCGAGGATGTGGAGAAAGAGGAACACTCACTCCTTCACTGTTGGTGGGA TTGCAAGCTTTTACAACCACTCTGGAAATCAGTCTGGCGGTTTCTCACAA AATTTGACAAGGTACTACTGTATTGATCCCGCAATACCGCTCCTGGGCAT ATATCCAGATTAACTTCTTTCACCCCCCCCCCCACACATGCTCCACTATG TTCATAGCAGTCTTATTTATAATAGCCAGAAAATGGAAAGAACTCAGAAG CTCCTCAACAGAGGAATGGATGCAAAAAATGTGGTACATTTACACAATGG ATTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCAAGGCTAA TGATTGGACCTGGAGGGCGTTATCGTGAGTGAAGTATCACAATCACAAAA GAACTCATACGATATGTACCAACTGATAACCGTACATTAGCCCAGAAACC CATAATACCCCAGATATACGTCACCACTTGCCCAACACATGACATCTCCC TACGATCAAATACCCTTTGTGTGTACCCTTTGTCCCTTCTTA	TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXCATTAGCATCCCCTAAGTAAAAGGTCTCCCAG TCTTTGAATGTCTTCACACGTGCACTGCTATTTGACAGTTCTCATTTTAG GCTTCTGTTTGCATGTCTTGAAATAATTAATTTTGAATGATATCTTGCTT CTTGCTTATTATTTTTATAATCATGGAGATGGATATGACAAAACTAGCCA TTTATTTAACTGTCAGTTGATGGACACTTCATGCATATTATAAAACAAAA CAAAGGCTCCCAAATCTGTCAAAAAGAGAGAATCTAGTAATAATGCTGTC TTTGAATATTTTTTTTATACACCCCCCCCCCCAAAATATTAATTATATAT TAATAAATTATATACTCAAAGATATAAAACCATCAGGACCTTATCATCAG CATCAACATCAGGGCATGTTAAAGAGCATCACATTATGCCTTTCCAAAAT TTGCCATGCTGGTATAACTGACTTTTGAGCTAAAGACTGTTAACTTTCTA AACTCACAACTGGACTTGAACGCCGCGGATAGCCTGGGGCCACTTATACC TGATGTTAATTCCATTCTCCTGCGTGGAGCTGCGAACCATGAATGAGTCA ATACTCATGTGATTTCTTGTAAACCTTCTTCCCTCCTTAATGTATAAAGC AAAGGCTATAGCCCGTGACTGGTTATAGAAAGAG
quality values	Open. Hide. 18 21 23 23 39 37 37 32 30 29 28 21 16 9 9 9 21 21 43 27 24 26 26 28 28 39 34 28 22 22 23 23 29 37 34 33 36 37 37 32 34 34 43 30 47 40 40 50 51 54 54 47 47 47 44 32 23 20 10 14 10 10 11 14 27 32 46 41 43 43 43 43 36 44 28 37 37 42 42 50 42 42 40 48 42 42 39 39 39 42 42 36 40 40 43 43 42 42 47 48 57 57 57 48 48 37 33 33 33 33 28 26 28 14 13 12 8 8 8 7 8 7 11 11 23 23 39 40 40 36 37 37 39 39 39 57 57 43 43 30 30 30 37 37 43 47 48 48 48 57 57 57 57 59 57 59 54 57 57 48 48 47 47 48 48 48 48 54 47 44 32 32 32 42 43 54 54 54 57 57 57 46 39 43 44 46 57 44 47 47 47 43 43 36 36 36 48 48 57 57 48 48 47 47 47 41 41 50 50 50 42 43 35 35 43 43 44 50 52 54 54 52 52 52 52 52 57 59 57 57 59 59 57 57 57 57 52 52 57 57 54 52 57 52 43 43 35 35 35 35 43 43 52 59 52 52 52 52 52 52 57 57 50 43 37 37 43 43 48 50 57 59 57 48 48 48 48 54 57 57 43 43 39 43 47 57 47 48 47 47 43 43 47 57 38 36 16 14 12 22 26 43 57 57 57 47 47 43 44 36 37 23 28 24 28 24 37 37 40 30 14 14 14 20 18 20 20 33 29 59 59 57 48 48 48 59 59 57 57 48 48 48 44 59 43 39 39 43 47 48 48 48 59 47 42 39 25 22 11 8 6 6 6 6 6 6 6 6 8 8 11 8 8 16 11 15 15 16 14 12 8 8 8 8 6 8 8 19 25 30 30 15 18 12 13 18 30 34 57 47 43 43 40 40 37 37 28 18 13 10 10 10 19 25 32 28 28 20 18 11 11 15 18 12 12 11 12 11 18 14 23 20 11 11 11 11 11 22 21 31 30 31 29 29 15 15 12 12 12 15 18 20 32 28 28 21 22 22 26 22 23 23 23 20 22 28 24 22 22 25 28 28 21 14 14 19 21 14 14 15 28 22 24 20 20 20 28 28 35 35 32 32 30 30 37 37 34 32 25 25 30 39 39 41 41 41 47 47 34 30 25 25 31 36 30 34 37 28 28 33 32 30 30 30 30 32 32 39 35 43 43 43 43 43 43 33 33 33 33 28 26 18 13 12 13 9 9 10 12 10 14 18 21 13 13 13 14 21 25 28 21 20 20 22 28 24 25 28 24 24 19 25 23 26 23 13 14 10 10 10 14 13 13 14 14 10 16 13 20 13 13 12 12 11 11 10 12 12 15 15 13 13 11 11 10 13 13 11 11 11 11 12 12 12 13 24 12 10 8 10 8 8 10 16 14 12 8 8 8 8 8 8 8 8 8 10 18 18 11 11 11 23 12 12 12 12 16 22 10 11 8 8 8 8 10 15 11 11 11 10 9 10 10 14 24 14 16 11 8 8 8 10 10 10 10 11 10 25 18 13 11 11 10 10 12 16 26 12 11 11 11 8 8 8 8 8 8 9 10 12 16 10 8 8 8 8 8 8 8 8 10 11 13 9 9 12 11 11 11 15 12 13 10 10 10 11 11 8 8 8 9 12 12 11 11 10 10 10 12 9 9 9	Open. Hide. 7 8 10 15 8 8 8 9 16 39 39 39 39 39 39 36 36 36 43 59 59 57 57 48 39 39 35 39 39 22 18 12 19 19 34 29 36 25 25 25 29 29 41 39 39 43 42 32 28 14 15 26 41 37 37 42 42 50 47 42 42 44 30 41 41 48 50 50 50 50 50 50 57 57 43 43 44 57 57 57 57 57 57 57 57 57 59 44 59 37 36 36 50 50 68 50 50 50 37 37 37 59 59 68 68 68 68 57 50 50 50 50 50 50 43 27 21 11 11 11 12 24 38 47 54 57 59 57 57 57 57 57 57 57 57 57 57 52 52 52 57 57 57 57 57 57 44 44 33 33 33 44 44 57 57 57 57 57 57 57 57 52 57 57 52 52 52 57 57 57 57 52 52 52 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 57 57 68 68 68 57 59 57 57 57 52 57 43 43 37 37 43 43 43 32 41 22 22 22 43 43 37 43 44 50 57 57 57 47 47 47 47 47 47 57 48 47 57 47 47 54 57 57 57 57 57 57 57 57 57 59 54 59 47 39 39 32 37 40 37 43 43 43 57 57 46 57 43 43 43 43 39 46 36 36 36 43 43 43 43 43 39 39 43 43 48 40 40 35 33 33 28 28 28 30 30 34 37 39 39 35 35 35 35 35 39 32 25 21 11 11 11 12 15 13 13 19 24 32 35 35 32 36 39 39 43 39 59 35 35 35 39 39 40 40 28 30 24 35 47 41 41 37 34 11 10 8 8 8 9 13 14 13 12 11 12 21 13 15 9 9 9 12 12 14 17 14 19 13 11 11 11 11 13 29 31 47 47 48 48 48 34 34 30 34 35 47 47 59 59 59 43 43 28 32 28 28 40 40 37 33 33 23 26 23 28 24 28 20 32 32 39 41 40 39 37 23 23 11 11 11 11 18 16 12 21 18 32 30 37 37 48 43 57 46 43 32 32 20 20 20 28 32 39 43 43 43 34 30 19 18 15 15 12 12 12 20 15 20 28 23 28 20 20 17 17 13 21 12 10 8 8 8 11 11 18 15 15 15 28 34 43 26 25 13 12 12 15 22 20 27 32 28 28 26 22 12 11 11 15 15 21 11 12 16 24 18 20 28 32 24 28 23 20 19 18 15 13 13 13 28 19 19 17 16 10 12 10 10 10 13 19 20 22 23 31 32 37 22 20 17 15 15 12 12 12 11 15 12 18 18 26 18 25 21 23 15 15 12 12 9 12 15 13 8 8 8 8 10 19 13 12 11 11 11 11 17 11 10 9 9 9 9 9 11 10 10 8 8 8 12 12 18 18 28 31 28 28 23 21 18 15 15 16 13 11 11 11 18 17 21 15 15 12 15 11 11 11 15 21 16 19 11 11 11 12 6 6 6 6 8 8 13 17 12 8 8 8 10 8 9 11 13 13 15 13 10 9 9 12 13 15 16 14 19 19 25 19 20 19 19 18 16 20 20 22 28 20 10 10 10 10 8 9 10 13 13 12 8 8 9 10 10 12 12 25 12 6 8 6 6 8 8 15 13 11 13 8 8 8 8 10 13 9 9 12 11 10 10 10 10 15 11 11 15 22 15 12 11 16 11 11 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no274_n04.g1 MSMg01no274_n04.g1 CHROMAT_FILE:
MSMg01no274_n04.g1 PHD_FILE: MSMg01no274_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:26 2005
         (292 letters)



>mm_chr3_112934428_112935119
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattagcatcccctaagtaaaaggtctcccagtctttgaatgtcttcacacgtgcactgc 60
           |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 488 cattagaatcccctaagtaaaaggtctcccagtctttgaatgtcttcacatgtgcactgc 429

                                                                       
Query: 61  tatttgacagttctcattttaggcttctgtttgcatgtcttgaaataattaattttgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tatttgacagttctcattttaggcttctgtttgcatgtcttgaaataattaattttgaat 369

                                                                       
Query: 121 gatatcttgcttcttgcttattatttttataatcatggagatggatatgacaaaactagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gatatcttgcttcttgcttattatttttataatcatggagatggatatgacaaaactagc 309

                                                                       
Query: 181 catttatttaactgtcagttgatggacacttcatgcatattataaaacaaaacaaaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 catttatttaactgtcagttgatggacacttcatgcatattataaaacaaaacaaaggct 249

                                                           
Query: 241 cccaaatctgtcaaaaagagagaatctagtaataatgctgtctttgaa 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cccaaatctgtcaaaaagagagaatctagtaataatgctgtctttgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information