BAC Information

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BAC

Clone NameMSMg01-275G06
Chromosome3 (Build37)
Map Location 32,327,565 - 32,328,191
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625125, Kcnmb2, LOC665514, Zmat3, 4930429B21Rik
Downstream genePik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275G06.T7 (MSMg01no275_g06.b1)MSMg01-275G06.TJ (MSMg01no275_g06.g1)
ACCAG413857AG413858
length709708
length of high quality
(start - end)
657 (53 - 709)627 (82 - 708)
definitionCHROMAT_FILE: MSMg01no275_g06.b1 PHD_FILE: MSMg01no275_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:07 2005CHROMAT_FILE: MSMg01no275_g06.g1 PHD_FILE: MSMg01no275_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGCATGTGAGGTGCTGAAGGTCCCTGCCCCCAGCTGGT
TCTGACTGGAAAATAAAGTTGCCGGTGCCCAATGGCTGGGCAGGGAGAAA
GAGGGGGGACATTATATTTCCTGGGCAAGGGAACTCAGGGAAGAAGATGG
ATTTAGAACCACCATGCCAGCAAAGTAAAAAGGTCAGGCCTGAGAAGTTC
AGGACAGAGAGACAGCTAACACGTTAAGAGTTGGGGATTGTGGCCCAGGA
GGGCTGCAGGCTGGGTCAGCCAGGATGGAATATAGGTTTTACTAAGTAAT
AATTCAGGAATGTGAGAGGGGAGTGTGTGCTACCGGAGGTTTGGGAGCAG
CCCCACCATTGAGCTGCTTAAAATATTAAAAATAAGGCTGTGTATATATG
TCTTTCATCCAAAAACCCACAACACTGGAGTGATAGCAAGGAATTCACGC
TGCCACTGGGTGAGGGGAATGGATTAATATATTACAGCAACACCTCCCCT
TGAGTTGCTAGGTAGGGGAAATATAAGAGAGTTCTCAAAACTACATAGGC
TACTACGTTGGTTGCTTCCCAGAACTTGAAGGTAAAACCATATTGCTGAA
GACAGCACACATCACCTCAGACATAAGACCTGGTGAAATTGTCTAGAACT
GACATGCAA
NNCTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACCCAGCCTGAGCCACA
TGAGACCCTGTAAAATCTACATTTTATACACACTGCTCACCTAGATCCTA
ACTGTCATTATTTTTAAAAGTTATCAACACACAGATACTCCTAAGCCACC
TATTGACCTCATCAGGAAACTTTGGTTTCTTGCTGCAGTAGTTATAGAAA
TATATTTTTATAATGCCTTTTATAGTTCTGTGAATGTGAATTTAATATGA
AAACAAATTGCAGCCCTTACTTAAGGGTTTAGAGTTTCCTTCATATTGTC
ATGAGGATTTGATTTCTACTCTACCCATCTTTGTGTCATTGAAAGCCTGT
TTTCTCATGGTTAGCTTGTAAAGGTCAAAGAAGGACAGCATTCTGAAGGA
AATGGACGGAGCATCTTTTCCAGAGCTTGTGCATATCACAGCTGTCTGTT
TGGACTTGTTCCAGCTACTGCCCAGTGGCTCTTACAAAAAGGAAATCTCA
GAGGCCAGACCGGGGCTCAGAACATGGTGCTGAAGGACACTTGCTTCCCA
TGAATCGCCCCTCCATGGGATGTGTTTATAATTAGACATCCCATCGCCAT
GCAGCTGGCCTCAGAGCACTCTAATCTCTTTAGATGCCCTCAGCCTCTTG
CTTACCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_g06.g1 MSMg01no275_g06.g1 CHROMAT_FILE:
MSMg01no275_g06.g1 PHD_FILE: MSMg01no275_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:07 2005
         (627 letters)



>mm_chr3_32327365_32328392
          Length = 1028

 Score = 1125 bits (582), Expect = 0.0
 Identities = 616/628 (98%), Gaps = 3/628 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacccagcctgagccacatgagaccctgtaaaatctacattttatacacactgctcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacccagcctgagccacatgagaccctgtaaaatctacattttatacacactgctcacc 260

                                                                       
Query: 61  tagatcctaactgtcattatttttaaaagttatcaacacacagatactcctaagccacct 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tagatcctaactgtcattatttttaaaagttatccacacacagatactcctaagccacct 320

                                                                       
Query: 121 attgacctcatcaggaaactttggtttcttgctgcagtagttatagaaatatatttttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgacctcatcaggaaactttggtttcttgctgcagtagttatagaaatatatttttat 380

                                                                       
Query: 181 aatgccttttatagttctgtgaatgtgaatttaatatgaaaacaaattgcagcccttact 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataccttttatagttctgtgaatgtgaatttaatatgaaaacaaattgcagcccttact 440

                                                                       
Query: 241 taagggtttagagtttccttcatattgtcatgaggatttgatttctactctacccatctt 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||
Sbjct: 441 taagggtttagagtttccttcatattgtcatgagaatttgatttctactctagggatctt 500

                                                                       
Query: 301 tgtgt--cattgaaagcctgttttctcatggttagcttgtaaaggtcaaagaaggacagc 358
           |||||  |||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 501 tgtgtgtcattgaaagcctgttttctcatggttagcttgtaaaggtcagtgaaggacagc 560

                                                                       
Query: 359 attctgaaggaaatggacggagcatcttttccagagcttgtgcatatcacagctgtctgt 418
           |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 attctgaaggaagtggacggagcatcttt-ccagagcttgtgcatatcacagctgtctgt 619

                                                                       
Query: 419 ttggacttgttccagctactgcccagtggctcttacaaaaaggaaatctcagaggccaga 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttggacttgttccagctactgcccagtggctcttacaaaaaggaaatctcagaggccaga 679

                                                                       
Query: 479 ccggggctcagaacatggtgctgaaggacacttgcttcccatgaatcgcccctccatggg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccggggctcagaacatggtgctgaaggacacttgcttcccatgaatcgcccctccatggg 739

                                                                       
Query: 539 atgtgtttataattagacatcccatcgccatgcagctggcctcagagcactctaatctct 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atgtgtttataattagacatcccatcgccatgcagctggcctcagagcactctaatctct 799

                                       
Query: 599 ttagatgccctcagcctcttgcttacca 626
           ||||||||||||||||||||||||||||
Sbjct: 800 ttagatgccctcagcctcttgcttacca 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1028
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1018
Effective search space:   628106
Effective search space used:   628106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)