Query= MSMg01no275_l05.b1 MSMg01no275_l05.b1 CHROMAT_FILE:
MSMg01no275_l05.b1 PHD_FILE: MSMg01no275_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:29 2005
(689 letters)
>mm_chr3_107845018_107846105
Length = 1088
Score = 1232 bits (637), Expect = 0.0
Identities = 676/689 (98%), Gaps = 1/689 (0%)
Strand = Plus / Plus
Query: 1 gacaatgctcaactttcccccctttaccttttcaccaacaaaccatgtccgctggcccag 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacaatgctcaacttttccccctttaccttttcaccaacaaaccatgtccgctggcccag 260
Query: 61 gaactgtgagaagagcttcaccattccagggagctgctccaagtattccaccttcagttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaactgtgagaagagcttcaccattccagggagctgctccaagtattccaccttcagttt 320
Query: 121 ttcctgaggcagaaaacagctgtcaccatgtaagttcctgaagaaggactggcccttcag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcctgaggcagaaaacagctgtcaccatgtaagttcctgaagaaggactggcccttcag 380
Query: 181 tatcatgcatggccctaaatagccagaggtgggcagccgtctccactaagatggagactc 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcatgcacggccctaaatagccagaggtgggcagccgtctccactaagatggagactc 440
Query: 241 agtcacactccaggtctcgatttaacatatgagcacttacttactagatgcctcggtagc 300
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 agtcacagtccaggtctcgatttaacatatgagcacttacttactagacgcctcggtagc 500
Query: 301 ccaccccacccttcaaatgcagtgggaggccagggaagaataagactgcccacagtgggg 360
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 501 ccaccccacccttcaaatgcagtggaagaccagggaagaataagactgcccacagtgggg 560
Query: 361 catcatcattcttgatgcctacatggctgggtaccctgagcacctggcaggtaccaatgc 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 catcatcattcttgatgcctacatggctgggtaccctgcgcacctggcaggtaccaatgc 620
Query: 421 caggcagcatcaaagaatcaagaactaaaatacgcagaggagatgagagtccacacaatg 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 caggcagcatcaaagaatcaagaactaaaatactcagaggagatgagagtccacacaatg 680
Query: 481 ggtccagaagaatgaaatatacttgagttttcccccataaattgaggagaatctgaagca 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 ggtccagaagaatgaaatatacttgagttttcccc-ataaattgaggagaatctgaagca 739
Query: 541 gaaaaggagagaaaatccttcaggctgaccctgtgctacctaaggaatatgctgacttca 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 740 aaaaaggagagaaaatccttcaggctgaccctgtgctacctaaggaatatgctgactcca 799
Query: 601 gggggtgtgaacagaagcactctgagaggctggaaagggttctgtgacagtccctcatct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gggggtgtgaacagaagcactctgagaggctggaaagggttctgtgacagtccctcatct 859
Query: 661 tggacttcattttctaatccataggatat 689
|||||||||||||||||||||| ||||||
Sbjct: 860 tggacttcattttctaatccatgggatat 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1088
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1078
Effective search space: 731962
Effective search space used: 731962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no275_l05.g1 MSMg01no275_l05.g1 CHROMAT_FILE:
MSMg01no275_l05.g1 PHD_FILE: MSMg01no275_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:29 2005
(289 letters)
>mm_chr3_107954542_107955230
Length = 689
Score = 551 bits (285), Expect = e-161
Identities = 288/289 (99%)
Strand = Plus / Minus
Query: 1 tctcctagaattgcgtgaggatgaggatgagctgacggactcggggtgcacaggccaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tctcctagaattgcgtgaggatgaggatgagctgacggactcggggtgcacaggccaggg 430
Query: 61 tctggcacgtgtggagtgcagtgtgaccatcgttgtgcatgattggtactagtcacagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tctggcacgtgtggagtgcagtgtgaccatcgttgtgcatgattggtactagtcacagac 370
Query: 121 cagcacctaccaacagttacaaaataggtgttcttcctttcttgtacagatgccttcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cagcacctaccaacagttacaaaataggtgttcttcctttcttgtacagatgccttcatg 310
Query: 181 aggaaactggagtccagaagagttgcagagtgagtaatacccagacctggaactagaagc 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aggaaactggagtccggaagagttgcagagtgagtaatacccagacctggaactagaagc 250
Query: 241 tgaatctcatgctccttctacttcccattctgatgagaaaatcagaaat 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgaatctcatgctccttctacttcccattctgatgagaaaatcagaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
