Query= MSMg01no275_m14.b1 MSMg01no275_m14.b1 CHROMAT_FILE:
MSMg01no275_m14.b1 PHD_FILE: MSMg01no275_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:35 2005
(294 letters)
>mm_chr3_43778690_43779383
Length = 694
Score = 389 bits (201), Expect = e-112
Identities = 251/273 (91%), Gaps = 14/273 (5%)
Strand = Plus / Minus
Query: 1 gagaagaatctgaccatgttgtgatttcctttacatatacacaaacacacaaccacacac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 552 gagaagaatctgaccatgttgtgatttcctttacatatacacaaacacacaa--acacac 495
Query: 61 acccacacacac-acacacactatatatatatatatatatatatatatatatatatgcac 119
| ||||||||| | | | | ||||||||||||||||||||||||||||||||||| |
Sbjct: 494 a--cacacacactatatata-tatatatatatatatatatatatatatatatatat--at 440
Query: 120 tatgtccacaatttttgaatatcagaaacttttttatttcatttaatatatacaccaata 179
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tatgtacacaatttttaaatatcagaaacttttttatttcatttaatatatacaccaatg 380
Query: 180 atagccaaaatagcttttagtgccctttcacttctagaaattgaatatgtatgtata--- 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atagccaaaatagcttttagtgccctttcacttctagaaattgaatatgtatgtatatat 320
Query: 237 ---tatacacacacacacactcacacacacaca 266
||||||||||||||||| ||||||||||||
Sbjct: 319 atgtatacacacacacacacacacacacacaca 287
Score = 68.4 bits (35), Expect = 5e-16
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 81 tatatatatatatatatatatatatatatatatat 115
|||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatatatatatatatatatatatatatatatat 475
Score = 68.4 bits (35), Expect = 5e-16
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 81 tatatatatatatatatatatatatatatatatat 115
|||||||||||||||||||||||||||||||||||
Sbjct: 443 tatatatatatatatatatatatatatatatatat 477
Score = 68.4 bits (35), Expect = 5e-16
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 81 tatatatatatatatatatatatatatatatatat 115
|||||||||||||||||||||||||||||||||||
Sbjct: 445 tatatatatatatatatatatatatatatatatat 479
Score = 68.4 bits (35), Expect = 5e-16
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 81 tatatatatatatatatatatatatatatatatat 115
|||||||||||||||||||||||||||||||||||
Sbjct: 447 tatatatatatatatatatatatatatatatatat 481
Score = 68.4 bits (35), Expect = 5e-16
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 81 tatatatatatatatatatatatatatatatatat 115
|||||||||||||||||||||||||||||||||||
Sbjct: 449 tatatatatatatatatatatatatatatatatat 483
Score = 66.5 bits (34), Expect = 2e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 82 atatatatatatatatatatatatatatatatat 115
||||||||||||||||||||||||||||||||||
Sbjct: 440 atatatatatatatatatatatatatatatatat 473
Score = 66.5 bits (34), Expect = 2e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 81 tatatatatatatatatatatatatatatatata 114
||||||||||||||||||||||||||||||||||
Sbjct: 451 tatatatatatatatatatatatatatatatata 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 10
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no275_m14.g1 MSMg01no275_m14.g1 CHROMAT_FILE:
MSMg01no275_m14.g1 PHD_FILE: MSMg01no275_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:35 2005
(680 letters)
>mm_chr3_43727529_43728608
Length = 1080
Score = 1261 bits (652), Expect = 0.0
Identities = 673/680 (98%)
Strand = Plus / Plus
Query: 1 tatagaagtctaatcaatgtagagacaatattttggcacttacatgcctgaatttttata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatagaagtctaatcaatgtagagacaatattttggcacttacatgcctgaatttttata 260
Query: 61 gtttctgtaatattttctcacttccttttttcaatcctgtacatataaaagaataggcat 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 gtttctgtaatattttctcacttccttttttcaatcctgtatatataaaagaataggcat 320
Query: 121 ttttaaaagaaaggaaagtgttttactgtgaactcttctgtccagggctttttattgtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttaaaagaaaggaaagtgttttactgtgaactcttctgtccagggctttttattgtaa 380
Query: 181 taattttctgctcatttatttgaaactacagaaacacatatggaatattcattgacttat 240
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 381 taattttctgctcatttatttgaaactacagacacacatgtggaatattcattgacttat 440
Query: 241 ataaaaatattacaaacgactgagcctacaaggtgttttaattttttccacactgctttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaaaatattacaaacgactgagcctacaaggtgttttaattttttccacactgctttg 500
Query: 301 atctttaaaactaatttatgtatcttattgtgtgatagacatgttcactcatgatgcagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctttaaaactaatttatgtatcttattgtgtgatagacatgttcactcatgatgcagt 560
Query: 361 ataaatgctatgcaatgctgcattgtgcacattgattgactattgatagcttgtctttat 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaatgctatgtaatgctgcattgtgcacattgattgactattgatagcttgtctttat 620
Query: 421 tctttgtaaatatattttattattaagtaaagttatatgaaggtatccattacacagtat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctttgtaaatatattttattattaagtaaagttatatgaaggtatccattacacagtat 680
Query: 481 gagaaagttaatgtcatttattattgaaactataatttactaaatgcatatcttcttctg 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 gagaaagttaatgtcatttattattgaaactataatttactaaatgcatatcttctcctg 740
Query: 541 tgatatttgatagtattccaatttaagttagacacttttgttatcataaaacagcaatca 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgatatttgatagtattcaaatttaagttagacacttttgttatcataaaacagcaatca 800
Query: 601 tatttaaatgttgggacataaaataattaatttttgtattttaatggtcctgttgttttt 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 801 tatttaaatgttgggacataaaattattaatttttgtattttaatggtcctgttgttttt 860
Query: 661 tatacatgcattaaaggaaa 680
||||||||||||||||||||
Sbjct: 861 tatacatgcattaaaggaaa 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
