Query= MSMg01no275_n03.b1 MSMg01no275_n03.b1 CHROMAT_FILE:
MSMg01no275_n03.b1 PHD_FILE: MSMg01no275_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:37 2005
(618 letters)
>mm_chr3_123608762_123609779
Length = 1018
Score = 1170 bits (605), Expect = 0.0
Identities = 614/617 (99%)
Strand = Plus / Plus
Query: 2 gctttggtcagtgtagcctgtgctgacatggctgtcctcacgtctctgcacactcctcac 61
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 202 gctttggtcagtgtagcctgtgctgacatggctgtcctcacgtctctgcagactcctcac 261
Query: 62 tgatctggatcataacaggaagcaggctcccctttcatgtcccctgccaggcctggcact 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgatctggatcataacaggaagcaggctcccctttcatgtcccctgccaggcctggcact 321
Query: 122 gtcggctttccagctgagttgctcgaccacataagtcatacccacatcttgcttaggcta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtcggctttccagctgagttgctcgaccacataagtcatacccacatcttgcttaggcta 381
Query: 182 ttatccactttaatttcaagcccatgtatccataatttttaaattgttttggaactcttt 241
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 382 ttatccactttaatttcaagcccatgtatccataatttttaaactgttttggaactcttt 441
Query: 242 tggacacattgcctttgtttaattgtactatgcattttaatttcgttaaggcacattttt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tggacacattgcctttgtttaattgtactatgcattttaatttcgttaaggcacattttt 501
Query: 302 atgtctcaattaacataacgaagatgttgcagtttggtcacatccgaggtctgaatctca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atgtctcaattaacataacgaagatgttgcagtttggtcacatccgaggtctgaatctca 561
Query: 362 gaggatggctgtcaaagggaaagaagggaatcagcgacacagaacgctgccctgtctctg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gaggatggctgtcaaagggaaagaagggaatcagcgacacagaacgctgccctgtctctg 621
Query: 422 tggaggcgcctgcaatgtcagcctgtttatagaaccacccaaggggaaagcacagccctg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tggaggcgcctgcaatgtcagcctgtttatagaaccacccaaggggaaagcacagccctg 681
Query: 482 tctgcctagggtgctgggaaactctcctgggctccagaattgctttctgatcttgcaatt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tctgcctagggtgctgggaaactctcctgggctccagaattgctttctgatcttgcaatt 741
Query: 542 ccttttctttaagaaactgaatgtgcttaagtcttttccagatgggatcttttaaggctg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ccttttctttaagaaactgaatgtgcttaagtcttttccagatgggatcttttaaggctg 801
Query: 602 gacatttattcttctaa 618
|||||||||| ||||||
Sbjct: 802 gacatttatttttctaa 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no275_n03.g1 MSMg01no275_n03.g1 CHROMAT_FILE:
MSMg01no275_n03.g1 PHD_FILE: MSMg01no275_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:37 2005
(577 letters)
>mm_chr3_123775059_123776035
Length = 977
Score = 1015 bits (525), Expect = 0.0
Identities = 564/577 (97%), Gaps = 2/577 (0%)
Strand = Plus / Minus
Query: 1 ctctctttgtgccagatatcccatcttctaaccctgctttatttcattcgacagtcagca 60
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct: 679 ctctctttgtgccagatatcccatcttctaaccctgctttagctcattggacagtcaaca 620
Query: 61 ttttcttgacaggcgaatgcttttacatagtgtacaagagattatctctacaaaggtgca 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 619 ttttcttgacaggtgaatgcttttacatagtgtacaagagattatctctacaaaagtgca 560
Query: 121 aaactacattggcaaaccctttagatgaagataaaagactagcagtgaatatgcttattc 180
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaactacattggcataccctttaaatgaagataaaagactagcagtgaatatgcttattc 500
Query: 181 ctttctcgctctaatttagttttggagaaataacatgtggtcataaaatgctctttctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctttctcgctctaatttagttttggagaaataacatgtggtcataaaatgctctttctta 440
Query: 241 ggcaaaaagtttgagattgaaattaaaagtgtataccttttaacaaacacaaatacttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggcaaaaagtttgagattgaaattaaaagtgtataccttttaacaaacacaaatacttcc 380
Query: 301 tccattgggtaaaactttaatatctgtttttcttttgcccaataagaaaatcagttggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tccattgggtaaaactttaatatctgtttttcttttgcccaataagaaaatcagttggca 320
Query: 361 aatgttatatttttttaaaactttacaattatattatataaacataaataaaaaattaaa 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 319 aatgttatattttta-aaaactttacaattatattatataaacataaataaaaa-ttaaa 262
Query: 421 caaggcattaagtaaagggtgcatgttgaactcttatttgaatcaattacttccctttgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaggcattaagtaaagggtgcatgttgaactcttatttgaatcaattacttccctttgt 202
Query: 481 taataaatggtcatgctaaaagaagaaaaaggaggagtgggaagacaaggggtgggggga 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taataaatggtcatactaaaagaagaaaaaggaggagtgggaagacaaggggtgggggga 142
Query: 541 ggagggggcagcagcagcctattggctgtttaacaga 577
||||||||||||||||||||||||||||||||||||
Sbjct: 141 agagggggcagcagcagcctattggctgtttaacaga 105
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
