Query= MSMg01no275_n09.b1 MSMg01no275_n09.b1 CHROMAT_FILE:
MSMg01no275_n09.b1 PHD_FILE: MSMg01no275_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:39 2005
(571 letters)
>mm_chr3_128829398_128830368
Length = 971
Score = 965 bits (499), Expect = 0.0
Identities = 554/577 (96%), Gaps = 11/577 (1%)
Strand = Plus / Minus
Query: 4 ggaattcactttgtacaccaggctggcctcaaactcagaaattcacctgcctctgcctcc 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ggaattcactttgtagaccaggctggcctcaaactcagaaattcacctgcctctgcctcc 820
Query: 64 cgagtgctgggatcaaaggcatgtg--ccaccacacctagctc-------tttttttttt 114
||||||||||| |||||| | || |||||||||| ||||| ||||||||||
Sbjct: 819 ttagtgctgggattaaaggc-t-tgcaccaccacacccagctcttttttttttttttttt 762
Query: 115 taatctcctgagccataaaggaaaaatcaggaatatagttccattcctgaagaatttaca 174
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ttatctcctgagccataaaggaaaaatcaggaatatagttccattcctgaagaatttaca 702
Query: 175 agccaaaaatatcagcaggaaccaagctattcattgccattcatccaggactggatttct 234
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 agccaaaactatcagcaggaaccaagctattcattgccattcatccaggactggatttct 642
Query: 235 tcttgtatcagaaaccaatcaacccacagacctgaatattcagactactgaaagcagaag 294
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tcttatatcagaaaccaatcaacccacagacctgaatattcagactactgaaagcagaag 582
Query: 295 cacagcatggattctatatgttcactattgtattcattttgtgcatttatttactgccca 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cacagcatggattctatatgttcactattgtattcattttgtgcatttatttactgccca 522
Query: 355 aaactaaaacttcatgatagttgcaactagaaaaataattaactctacatcttctttcaa 414
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 521 aaactaaaacttcatgacagttacaactagaaaaataattaactctacatcttctttcaa 462
Query: 415 aactcacactcagtgcctgcactcagcccttcctcatcccctaacatttagcctttaaca 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 461 aactcacactcagtgcctgcactcagcccttcctcatcccctaacatttagcctttcaca 402
Query: 475 ttctctttcctacatgttgtatgtacccacatacatttgcttacatatacacatatatta 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttctctttcctacatgttgtatgtacccacatacatttgcttacatatacacatatatta 342
Query: 535 atggctagggtatacatatggagctttcccccctgag 571
||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttggctagggtatacatatggagctttcccccctgag 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no275_n09.g1 MSMg01no275_n09.g1 CHROMAT_FILE:
MSMg01no275_n09.g1 PHD_FILE: MSMg01no275_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:39 2005
(538 letters)
>mm_chr3_128657013_128657955
Length = 943
Score = 924 bits (478), Expect = 0.0
Identities = 522/540 (96%), Gaps = 7/540 (1%)
Strand = Plus / Plus
Query: 5 agttgctgttctcgttgctggggctctggccatgcaggggcccgtactgcagcctgagag 64
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 205 agttgctgttctcgttgctggggctctggccatgcaggggccagcactgcagcctgagag 264
Query: 65 aaaccctcaagggtctccccataactctcctcatatttatgtaacgtcgccctgttgaga 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaccctcaagggcctccccataactctcctcatatttatgtaacgtcgccctgttgaga 324
Query: 125 tgaaggtcagggttgctagacgctttcctgtccaccttctctacttgagcataggcactg 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 tgaaggtcagggttgctagacgctttcctgtccaccttctctgcttgagcataggcactg 384
Query: 185 agggctttctgggagatcttagggttctggccagtattgaaataaagagaaagatatgca 244
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agggcttgctgggagatcttagggttctggccagtattgaaataaagagaaagatatgca 444
Query: 245 ttccccaggatataccaggagcggccatcaaggacatccatctgtacggccaacttagcc 304
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 445 ttccccaggatataccaggagcggccatcaaggacatctatctgcacggccaacttagcc 504
Query: 305 tgccggacgctgtccatgatgtggcgagaatgctcatctccagagtcggtctgcagctgg 364
||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 505 tgccggacgctgttcatgatgtggcgagaatgttcatctccggagtcggtctgcagctgg 564
Query: 365 cggagcaccatggacaagatctgcagagagactttgttcttgcagtgggtggagggctcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 565 cggagcaccatggacaagatctgcagagagactttgttcttgcagtgggtg-agggctcc 623
Query: 425 tgagaagcaggtgtgagcagacgcgacatctcctttcttccagtacatcttacccagctg 484
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgagaagcaggtgtgggcagacgcgacatctcctttcttccagtacatcttacccagctg 683
Query: 485 gttccaggcttccatgagctc------cagcttcacggcctttgagagaagcacctcggc 538
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 684 gttccaggcttccatgagctcaggctccagcttcacggcctttgagagaagcacctcggc 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 943
Length adjustment: 10
Effective length of query: 528
Effective length of database: 933
Effective search space: 492624
Effective search space used: 492624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|