BAC Information

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BAC

Clone NameMSMg01-275N09
Chromosome3 (Build37)
Map Location 128,657,217 - 128,830,276
singlet/doubletdoublet
Overlap geneEG668831
Upstream geneLOC100043382, EG668828, LOC100043393
Downstream genePitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275N09.T7 (MSMg01no275_n09.b1)MSMg01-275N09.TJ (MSMg01no275_n09.g1)
ACCAG414180AG414181
length756754
length of high quality
(start - end)
571 (43 - 613)538 (70 - 607)
definitionCHROMAT_FILE: MSMg01no275_n09.b1 PHD_FILE: MSMg01no275_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:39 2005CHROMAT_FILE: MSMg01no275_n09.g1 PHD_FILE: MSMg01no275_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:39 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(128,829,702 - 128,830,276)(128,657,217 - 128,657,755)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTTTGTACACCAGGCTGGCCTCAAACTCAGAAATTCACCTGCCTCTG
CCTCCCGAGTGCTGGGATCAAAGGCATGTGCCACCACACCTAGCTCTTTT
TTTTTTTAATCTCCTGAGCCATAAAGGAAAAATCAGGAATATAGTTCCAT
TCCTGAAGAATTTACAAGCCAAAAATATCAGCAGGAACCAAGCTATTCAT
TGCCATTCATCCAGGACTGGATTTCTTCTTGTATCAGAAACCAATCAACC
CACAGACCTGAATATTCAGACTACTGAAAGCAGAAGCACAGCATGGATTC
TATATGTTCACTATTGTATTCATTTTGTGCATTTATTTACTGCCCAAAAC
TAAAACTTCATGATAGTTGCAACTAGAAAAATAATTAACTCTACATCTTC
TTTCAAAACTCACACTCAGTGCCTGCACTCAGCCCTTCCTCATCCCCTAA
CATTTAGCCTTTAACATTCTCTTTCCTACATGTTGTATGTACCCACATAC
ATTTGCTTACATATACACATATATTAATGGCTAGGGTATACATATGGAGC
TTTCCCCCCTGAGACTGTGTGATCTTACTTAATATTATACATTCTAAGTA
CATCCATTTTCCTGCAATTTTTTTCATATAATTTTTTATTAGGTATTTTC
TTCATTTACATTTCCAGTGCTATCCCAAAAGTCCCCCAGAACCTCCCCAC
GACTCC
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGTAGTTGCTGTTCTCGTTGCTGGGGCTCT
GGCCATGCAGGGGCCCGTACTGCAGCCTGAGAGAAACCCTCAAGGGTCTC
CCCATAACTCTCCTCATATTTATGTAACGTCGCCCTGTTGAGATGAAGGT
CAGGGTTGCTAGACGCTTTCCTGTCCACCTTCTCTACTTGAGCATAGGCA
CTGAGGGCTTTCTGGGAGATCTTAGGGTTCTGGCCAGTATTGAAATAAAG
AGAAAGATATGCATTCCCCAGGATATACCAGGAGCGGCCATCAAGGACAT
CCATCTGTACGGCCAACTTAGCCTGCCGGACGCTGTCCATGATGTGGCGA
GAATGCTCATCTCCAGAGTCGGTCTGCAGCTGGCGGAGCACCATGGACAA
GATCTGCAGAGAGACTTTGTTCTTGCAGTGGGTGGAGGGCTCCTGAGAAG
CAGGTGTGAGCAGACGCGACATCTCCTTTCTTCCAGTACATCTTACCCAG
CTGGTTCCAGGCTTCCATGAGCTCCAGCTTCACGGCCTTTGAGAGAAGCA
CCTCGGCCTTAGGGCTATAGTCAGGAGTCACATTCAGTGCCTTCCCCTTC
AGCATCAGAGCCTGTGCCTCAACCTGGACAGAACCAAGTAAGTACTTCCT
CCATCTGCTGCAGGGTCTTCTCCATCTCTTTCTGAACATCCTGCTGCTTC
CGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_n09.b1 MSMg01no275_n09.b1 CHROMAT_FILE:
MSMg01no275_n09.b1 PHD_FILE: MSMg01no275_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:39 2005
         (571 letters)



>mm_chr3_128829398_128830368
          Length = 971

 Score =  965 bits (499), Expect = 0.0
 Identities = 554/577 (96%), Gaps = 11/577 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactttgtacaccaggctggcctcaaactcagaaattcacctgcctctgcctcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ggaattcactttgtagaccaggctggcctcaaactcagaaattcacctgcctctgcctcc 820

                                                                       
Query: 64  cgagtgctgggatcaaaggcatgtg--ccaccacacctagctc-------tttttttttt 114
             ||||||||||| |||||| | ||  |||||||||| |||||       ||||||||||
Sbjct: 819 ttagtgctgggattaaaggc-t-tgcaccaccacacccagctcttttttttttttttttt 762

                                                                       
Query: 115 taatctcctgagccataaaggaaaaatcaggaatatagttccattcctgaagaatttaca 174
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ttatctcctgagccataaaggaaaaatcaggaatatagttccattcctgaagaatttaca 702

                                                                       
Query: 175 agccaaaaatatcagcaggaaccaagctattcattgccattcatccaggactggatttct 234
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 agccaaaactatcagcaggaaccaagctattcattgccattcatccaggactggatttct 642

                                                                       
Query: 235 tcttgtatcagaaaccaatcaacccacagacctgaatattcagactactgaaagcagaag 294
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tcttatatcagaaaccaatcaacccacagacctgaatattcagactactgaaagcagaag 582

                                                                       
Query: 295 cacagcatggattctatatgttcactattgtattcattttgtgcatttatttactgccca 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cacagcatggattctatatgttcactattgtattcattttgtgcatttatttactgccca 522

                                                                       
Query: 355 aaactaaaacttcatgatagttgcaactagaaaaataattaactctacatcttctttcaa 414
           ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 521 aaactaaaacttcatgacagttacaactagaaaaataattaactctacatcttctttcaa 462

                                                                       
Query: 415 aactcacactcagtgcctgcactcagcccttcctcatcccctaacatttagcctttaaca 474
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 461 aactcacactcagtgcctgcactcagcccttcctcatcccctaacatttagcctttcaca 402

                                                                       
Query: 475 ttctctttcctacatgttgtatgtacccacatacatttgcttacatatacacatatatta 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttctctttcctacatgttgtatgtacccacatacatttgcttacatatacacatatatta 342

                                                
Query: 535 atggctagggtatacatatggagctttcccccctgag 571
            ||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttggctagggtatacatatggagctttcccccctgag 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no275_n09.g1 MSMg01no275_n09.g1 CHROMAT_FILE:
MSMg01no275_n09.g1 PHD_FILE: MSMg01no275_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:39 2005
         (538 letters)



>mm_chr3_128657013_128657955
          Length = 943

 Score =  924 bits (478), Expect = 0.0
 Identities = 522/540 (96%), Gaps = 7/540 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   agttgctgttctcgttgctggggctctggccatgcaggggcccgtactgcagcctgagag 64
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 205 agttgctgttctcgttgctggggctctggccatgcaggggccagcactgcagcctgagag 264

                                                                       
Query: 65  aaaccctcaagggtctccccataactctcctcatatttatgtaacgtcgccctgttgaga 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaccctcaagggcctccccataactctcctcatatttatgtaacgtcgccctgttgaga 324

                                                                       
Query: 125 tgaaggtcagggttgctagacgctttcctgtccaccttctctacttgagcataggcactg 184
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 tgaaggtcagggttgctagacgctttcctgtccaccttctctgcttgagcataggcactg 384

                                                                       
Query: 185 agggctttctgggagatcttagggttctggccagtattgaaataaagagaaagatatgca 244
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agggcttgctgggagatcttagggttctggccagtattgaaataaagagaaagatatgca 444

                                                                       
Query: 245 ttccccaggatataccaggagcggccatcaaggacatccatctgtacggccaacttagcc 304
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 445 ttccccaggatataccaggagcggccatcaaggacatctatctgcacggccaacttagcc 504

                                                                       
Query: 305 tgccggacgctgtccatgatgtggcgagaatgctcatctccagagtcggtctgcagctgg 364
           ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 505 tgccggacgctgttcatgatgtggcgagaatgttcatctccggagtcggtctgcagctgg 564

                                                                       
Query: 365 cggagcaccatggacaagatctgcagagagactttgttcttgcagtgggtggagggctcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 565 cggagcaccatggacaagatctgcagagagactttgttcttgcagtgggtg-agggctcc 623

                                                                       
Query: 425 tgagaagcaggtgtgagcagacgcgacatctcctttcttccagtacatcttacccagctg 484
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgagaagcaggtgtgggcagacgcgacatctcctttcttccagtacatcttacccagctg 683

                                                                       
Query: 485 gttccaggcttccatgagctc------cagcttcacggcctttgagagaagcacctcggc 538
           |||||||||||||||||||||      |||||||||||||||||||||||||||||||||
Sbjct: 684 gttccaggcttccatgagctcaggctccagcttcacggcctttgagagaagcacctcggc 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 943
Length adjustment: 10
Effective length of query: 528
Effective length of database: 933
Effective search space:   492624
Effective search space used:   492624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)