BAC Information

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BAC

Clone NameMSMg01-275O06
Chromosome3 (Build37)
Map Location 21,328,463 - 21,328,746
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665094
Downstream geneLOC100040325, 7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275O06.T7 (MSMg01no275_o06.b1)MSMg01-275O06.TJ (MSMg01no275_o06.g1)
ACCAG414221AG414222
length721729
length of high quality
(start - end)
674 (48 - 721)286 (78 - 363)
definitionCHROMAT_FILE: MSMg01no275_o06.b1 PHD_FILE: MSMg01no275_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:42 2005CHROMAT_FILE: MSMg01no275_o06.g1 PHD_FILE: MSMg01no275_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTCTTAATTTTATTTCTGTCGCTATGATAAAATAACCTGACA
GAAAGCAATTAAGGGAAGAAAGAGCTCATTTTAGTTCCATGAGATCATAG
TCAATTATTGTAGGGAAGTCACAGCTGTAAAAACTTAAAGTAGCTAGCCA
CATTACTTGTTTATTTATTTTTGCTCATTTCCATTTCTCCAAGACATCTA
GCTTAAGGAATGGTGCCACTCACAGTTAGCTAGCTTTAATTAAATTAAGT
TAAAGCAATCCCACAGGTCAATTCAGTGTAGTCGATCCTCCACTAGGACA
CTTCCTTTGTGATTATAGGTTGTATCAAGTTGATAATTAAAACTAACCAT
CATAGACTTTAAGTCAATGTTCCACAGAAATACTTGCACTACTCATAATA
CCTGAAATATGACATCATCTTAGATGCCCATCAACAGACACATGAATAAA
GAAAATTCAGCATATATTAACTATAAAGTCCTATTCAGCCATGTAAGATA
ACAAAAATATTTCATGTAGAAAAAAAATGACACATCTGGAGATGATTACA
TTATGTGGACTAAAGCACAGAAATACAAATGTTATGTGTGCTCTTGTTTG
TGAATTTTAGATATTATGTGATACATAGATACAAAAATCATAGGCATTTA
TAGACGTTTAAAGTAAAACTA
ACGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCATTGTGGCAGTTCAGACTCA
GTTTCTGGCTATCAAACACATGCAATGCTATGACTTAGACTTTGTGAATA
TTTTATAGTCATCATGTTTTTCCTTCCTTGTGGTTTTAGATCTATAAAGG
GAAAGGGGTAGTAGAATGCATGCTGGTAGCATCATTAGAGGAAAGGGCCA
CCAAACCATGACTAGACATTGAGGTTGGGAGAGGTCTAGAAAAGAATAAC
AAAGTGTCAAAATTAGGGTATCCAAGGCTTAAAAGCAAGGAGGGCTTCCC
TTTAAAACCTGTATATGAACCTCACAACACTTGAAGCAAGAGTAAGAAAG
AGAGCCATCAAAGGATGACAGGGTAGATCCAGAAAAGTTCCTTCAACAAA
GAAAACATCAGGCTATTATAAATTTTTGAGGACCAGGAATGAGGTTAGTT
AAGTATCTTAACAAATTATGTATGTTTATGTGTATGTATATGTGTATGTG
AACATATGCCTTGAGTATGCTGGTGTCTATGAAGGCTTGAAAACGGTGTC
AGATTGCCCTGAAACTGAGTTCCAGATCATTATAAGACACCATGTGCCTC
CAGGGAGAATAACTTGGATCAACTGGAGGAGAAACATGCTCTCAACTACT
GATCCATCTCTCTAGATCCTGGAGGGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_o06.g1 MSMg01no275_o06.g1 CHROMAT_FILE:
MSMg01no275_o06.g1 PHD_FILE: MSMg01no275_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:42 2005
         (286 letters)



>mm_chr3_21328263_21328948
          Length = 686

 Score =  503 bits (260), Expect = e-147
 Identities = 278/284 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcattgtggcagttcagactcagtttctggctatcaaacacatgcaatgctatgactta 60
           |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 484 ctcattgtggcagttcagactcagcttctggccatcaaacacatgcaatgctatgactta 425

                                                                       
Query: 61  gactttgtgaatattttatagtcatcatgtttttccttccttgtggttttagatctataa 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 424 gactttgtgaatattttatagtcatcatgtttttccttccttgtggatttagatctataa 365

                                                                       
Query: 121 agggaaaggggtagtagaatgcatgctggtagcatcattagaggaaagggccaccaaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agggaaaggggtagtagaatgcatgctggtagcatcattagaggaaagggccaccaaacc 305

                                                                       
Query: 181 atgactagacattgaggttgggagaggtctagaaaagaataacaaagtgtcaaaattagg 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 304 atgactagacattgaggttgggagaggtctagaaaagaataacaatgtgtcaaaattagg 245

                                                       
Query: 241 gtatccaaggcttaaaagcaaggagggcttccctttaaaacctg 284
           |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 244 gtatgcaaggcttaaaagcaaggaaggcttccctttaaaacctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)