Query= MSMg01no276_c08.b1 MSMg01no276_c08.b1 CHROMAT_FILE:
MSMg01no276_c08.b1 PHD_FILE: MSMg01no276_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:01 2005
(696 letters)
>mm_chr3_30138445_30139540
Length = 1096
Score = 1268 bits (656), Expect = 0.0
Identities = 683/692 (98%)
Strand = Plus / Plus
Query: 5 gaattccaggctcagattagtggcctttattctcctatcaaaccagcaactatgagtttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggctcagattagtggcctttattctcctatcaaaccagcaactatgagtttt 264
Query: 65 attaaagtcttctaagatgggttattgggctacaaggtagaagacacacattctactctc 124
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 attaaagccttctaagatgggttattgggctacaaggtagaagacacacattctgctctc 324
Query: 125 aatttcttcccttactcactatagaaattcacactaccactcatcaacaactttctagtg 184
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatttcttcccttactcattatagaaattcacactaccactcatcaacaactttctagtg 384
Query: 185 aatctggatcctgcttcttaaagttacatataataacacacaataaaaagtgataagcta 244
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 agtctggatcctgcttcttaaagttatatataataacacacaataaaaagtgataagcta 444
Query: 245 tgcaaagctgtatttaatgcaggggtagattgtgattcaaacactgaatgtatgtcattt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcaaagctgtatttaatgcaggggtagattgtgattcaaacactgaatgtatgtcattt 504
Query: 305 aaactaagcatgtgataggcctgctggctgcaggcttgcattgggaacctagttctcagc 364
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaactaagcatgtgacaggcctgctggctgcaggcttgcattgggaacctagttctcagc 564
Query: 365 atatgggttcattaccttgcaaattcagcacgtccaaaactgggaccattgtcacctgcc 424
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 atatgggttcattaccttgcaaattcagcatgtccaaaactgggaccattgtcacctgcc 624
Query: 425 ctccaatcaggtactttgtccatttccccagtttaattaggaatgttagcttttccctaa 484
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 625 ctccaatcaggtactttgtccatttccccagtttaactaggaatgctagcttttccctaa 684
Query: 485 ctacattagatccttcagagtaatacggagatttgctctccttttcttataatctattct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctacattagatccttcagagtaatacggagatttgctctccttttcttataatctattct 744
Query: 545 tctacaaaatttattactgtcatctgatccgttcaattcacatttagcacctaaaatttc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tctacaaaatttattactgtcatctgatccgttcaattcacatttagcacctaaaatttc 804
Query: 605 tagcagtgcttgctcttcactagtctccagaccaccagtgtcttgacttgagacctaaat 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tagcagtgcttgctcttcactagtctccagaccaccagtgtcttgacttgagacctaaat 864
Query: 665 actgaattcatcttccccacacgtcctccttc 696
||||||||||||||||||||||||||||||||
Sbjct: 865 actgaattcatcttccccacacgtcctccttc 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space: 744996
Effective search space used: 744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no276_c08.g1 MSMg01no276_c08.g1 CHROMAT_FILE:
MSMg01no276_c08.g1 PHD_FILE: MSMg01no276_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:01 2005
(621 letters)
>mm_chr3_30248714_30249734
Length = 1021
Score = 969 bits (501), Expect = 0.0
Identities = 521/531 (98%), Gaps = 7/531 (1%)
Strand = Plus / Minus
Query: 91 ttgtttccccaattaaacctcccattttcctacatgtgtttgtaagctgtattttaggaa 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 ttgtttccccaattaaacctcccattttcctacatgtgtttgtaagctgtattttaggaa 962
Query: 151 cattgttcatttgagaatttagtatttctgaggagatcgatcttcctatgtagagtccat 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 cattgttcatttgagaatttagtatttctgaggagatcgatcttcctatgtagagtccat 902
Query: 211 gtctgagccactttgtgccggaagaataacactaacctaacagatgggtagggaagggac 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gtctgagccactttgtgccggaagaataacactaacctaacagatgggtagggaagggac 842
Query: 271 ctggccaacagttcctgtcatagtggccaaccactatgacagaggcatttaaaatcttat 330
|||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 841 ctggccaacagttcctgt--ta-----caaccactatgacagaggcatttaaaatcttat 789
Query: 331 ccaggctactcggaggtaagcgtcttgtagcctaagcaacagagaagacattgccttgtt 390
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 788 ccaggctactcggaggtaagcgtcttgtagcccaagcaacagagaagacattgccttgtt 729
Query: 391 gttgaagggctaaacttatctctaagctgaattcaggagacgactaagtagattggcata 450
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 728 gttgaagggctaaacttatctctaagctgaattcaggagaagactaagtagattggcata 669
Query: 451 caatcttaagaagaaacagctgtccacctgccatgacttagaagagacagaagaagagag 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 caatcttaagaagaaacagctgtccacctgccatgacttagaagagacagaagaagagag 609
Query: 511 gcacactgtccagttagagatgccagcaaattaaggccacctaactccactgagcccagg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gcacactgtccagttagagatgccagcaaattaaggccacctaactccactgagcccagg 549
Query: 571 aaaccttgtctcaccaaatgtggtgctgtctttccagaaagcatttctcca 621
|||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 548 aaaccttgtctcaccaaatgtggtactgtctttccagaaagcatttctcca 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
