BAC Information

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BAC

Clone NameMSMg01-276J11
Chromosome3 (Build37)
Map Location 32,151,322 - 32,151,611
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc7a14, LOC625125, Kcnmb2
Downstream geneLOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276J11.T7 (MSMg01no276_j11.b1)MSMg01-276J11.TJ (MSMg01no276_j11.g1)
ACCAG414732AG414733
length731796
length of high quality
(start - end)
248 (116 - 363)292 (125 - 416)
definitionCHROMAT_FILE: MSMg01no276_j11.b1 PHD_FILE: MSMg01no276_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:33 2005CHROMAT_FILE: MSMg01no276_j11.g1 PHD_FILE: MSMg01no276_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGAG
GTTACCTCCAACCTCGTCCCTACCTGTGGCTTATCCCAGTGAGCATGATG
GACTTGCTTTCATTCATGCTGAATGACCAGTTTCTGCCTTTTGCTACTGA
GTAGCGCCTTACAATAGTGACCTATCCTTCCTTGCATTTGGGTAGGTTTA
ATTATAGTACTACAAATAATCTTCTATAGTCACCCGTGTTTACACTTCTT
TGGAACTTTGAGTTTTACTCTCCTGAATAAAAGGCACAGGTATAATCGTT
GAGTCATTCAGTAAGTGTATGCTTGGTTCTGTGAGAACCTGCTCTACAAT
GTTGTTTTTATATCCCCGCCCGACTCAGGGGGATCTCATCCAACCTGCTA
AACTAGGTGGCCATCAAAGACCTTGTGCCTGCCTGCCTCTGTCCGTGTTG
CTGGAACCAAAGCTGCTCACCACTATGCCCTGTTTCTTGTGTGGCTACTG
GAGATCTGAACTCAGTTCCTCAAGTGTGTGCACCAAGCCCTTTACCCACC
AAGGCATATCTCCGGCTCCTTATCTTGACTTTAATTCACGTTTCCCATGT
GGCTGATGATTTGATCGTGTGTTCCGTGCTAATTCTGCATCACTTGTGAA
AAAGTTTTGCACGTTTTAAAAATCCGATTGGTTGAATTCCATAATTTTGA
AATTTTGTACTTTTCCACAACCTCTGGGAAT
NAATTTNNNNNNCCTTTTTTTTTCTTTTTATTAATCTTACTTTTNTCCTC
TATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGTCCTGATTTCCTTCTATGATAAA
TGGTGATACAGAAGTGTGATCCACCCAAACCCTGTCCTCACTAATGTATT
TTGTGGTAATAGTGTTTCATTGCAACAATAAAAGGCTAACTAAGACAACT
AGTCATAGGAGCCTGGGTTTGGTGGTGGTACACTGGAGATGTAGCTTCTG
AGTTGGAAGTGGTAGTAGTATTTATTTACTACTAATATTTGTTTAAGAAA
AGCCTTTGTTTCATTTCTTCCTTTTCCAAAATTTTATTCTTAAATTTTAA
TTAGGATTTCTTGATTATTTTTATCCCACCCCCGCCCCGTGAATATTACC
ACAGTATTTTCATAATATAAAATGAGCTGTTTTATGAAAAGTTCAGGGTG
ATGTGCTTGGAAATCACAATTACATATATAATAATATGATGATAATCATG
ATAGATGCTACCCATGGACTAATTTCTGTTAACTTTGTGTGTATGTGTCC
ACATTCTAGAGTGCAAACCATGGTTTTCATGTGGAAGTCAGAGGACAGCC
TCCTGGAGCCAGTTTTCTCCTTCCTACTTGTTGTTCGAACTCTCAACTCT
GGTAGGAATGCCAATATACACCTTTCCTCGCTTATCATCCTGATTGCCAC
CACACTTGCTTTATCAATCATTTTCGTGAAATTTATGTATGCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_j11.g1 MSMg01no276_j11.g1 CHROMAT_FILE:
MSMg01no276_j11.g1 PHD_FILE: MSMg01no276_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:34 2005
         (292 letters)



>mm_chr3_32150999_32151690
          Length = 692

 Score =  491 bits (254), Expect = e-143
 Identities = 281/290 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtcctgatttccttctatgataaatggtgatacagaagtgtgatccacccaaaccctg 60
           ||||||||||||||||||||||||||||||||||| ||||| ||| |||   ||||||||
Sbjct: 613 ctgtcctgatttccttctatgataaatggtgatacggaagtatgagccaaataaaccctg 554

                                                                       
Query: 61  tcctcactaatgtattttgtggtaatagtgtttcattgcaacaataaaaggctaactaag 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 553 tcctcactaatgtgttttgtggtaatagtgtttcattgcaacaataaaaagctaactaag 494

                                                                       
Query: 121 acaactagtcataggagcctgggtttggtggtggtacactggagatgtagcttctgagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 acaactagtcataggagcctgggtttggtggtggtacactggagatgtagcttctgagtt 434

                                                                       
Query: 181 ggaagtggtagtagtatttatttactactaatatttgtttaagaaaagcctttgtttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggaagtggtagtagtatttatttactactaatatttgtttaagaaaagcctttgtttcat 374

                                                             
Query: 241 ttcttccttttccaaaattttattcttaaattttaattaggatttcttga 290
           ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 373 ttcttccttttccaaaattttattcttaagttttaattaggatttcttga 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)