BAC Information

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BAC

Clone NameMSMg01-276L02
Chromosome3 (Build37)
Map Location 29,491,954 - 29,492,115
singlet/doubletsinglet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276L02.T7 (MSMg01no276_l02.b1)MSMg01-276L02.TJ (MSMg01no276_l02.g1)
ACCAG414807AG414808
length732785
length of high quality
(start - end)
322 (45 - 366)164 (77 - 240)
definitionCHROMAT_FILE: MSMg01no276_l02.b1 PHD_FILE: MSMg01no276_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:40 2005CHROMAT_FILE: MSMg01no276_l02.g1 PHD_FILE: MSMg01no276_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCAATCTTTGAAAGTTGGCAACTAATTAAAATTATTTTATAACAG
CATGGAAGGCATATTCTGCAGCCACTTCAAACACATTTGTGGCTAGATTT
GGCCAAGGACCTACCATTTATAACCTCTAGTTTATAGAGTCTTTACATAA
TGATATTTCACACATGGATTATCTCATTTAATGCTCCCAAACACCCCTGT
GATGTGGGTTACAGTGGTTTTAATTTTCTCTTGGAAAAAACTAAAGCTTG
CAGACTAAAGCATTGTATAGATTTAGATAACCAGTAAGGTCAGAAATCAA
GACTCAATTTGAAATCTTTGAACCTCTGCACCCCCCTTTCTTTCAATTTT
AATACTAGGAGAGGTACTGAAATATCTTTTGTTTGTTTGTTTTAATTCCA
GGCAGCAGGAAAAATTGATGGATTTACAAGGAGAAAAAAACAACAAGCAA
ACAAACACACACACACAAAGGTAAATCTACTCACCCAAACACACAAAGAA
AAACCCCTCACCCAAACAATTTGTCACATACTGTGTAAACCAGGATGTTT
GAGATATGTAATTAAACCCCTAACCCCNNGTTTNNTTTTCTTCCTCTTTT
TCCTCCCCCCTCCTTTCTCCCTCCCCTCCGGTTTTTCTGTCTTTCCTGCC
TCTTTTTTCTTAACCCACCTTCTTTTTATTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGACCTCTCCCTAATGTCCTGA
TAATCATCAAAGTGCTACCTTGGACTCCTTTCTATTCCCTCCTGTGTAAT
ATTTTCACTTAAGATGTTTTACTTTCTACCATTAGCTAGAAGACTGTGGT
GCCCAAAACAGCACCTTTTAATAGGTGGCTACTTGCTCNACTNTTGNNNA
GTCACNNATATTGGATGCAATGCCTTNTTTCCCACCCCAGGGGAAAATCA
TCTGCATTGTGAACCCGATGAAGCTGAAACTGACTTTTCTCCCTTTTAAA
AAAACCCCCGGGGGGTCGACCCAAAAACCCCTTTTTTTTGGGGGCCCCCC
CCCCCCACACAAAAAAAGAGGCTTTTTTTACAATTCCTCCCCNTNNNCGT
GTCTGGGGGCGCCCCCNNCCTCCCTTCCCCCCCCTCACCTATTTGGGGGG
GGTTTTTTTCTCCCTCCCCACCCATTATTTCTTTCTCCCCTTTTTTCCCT
TCTCCCCCCTNNNNNNNNNNNNNNNNNNNAAAANNCCTGACCNCTCAGNN
AGNNNNNNNNAGCTAGTAAGGAGGGGGATCGGNNNNNNGNNNNNNNNNNN
NGGGGGNNNNNNGGNNNNNNTNCTTNNTTTTTCTTCCCGCCTCCCTCCTA
TTATTNNNCCTNCGGNTTTAATTGTACTTTCCTTTCCCCCTNAAAGAGCA
GCCACTTTTTTTTTTTTCTTTTTTCCCCGCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_l02.g1 MSMg01no276_l02.g1 CHROMAT_FILE:
MSMg01no276_l02.g1 PHD_FILE: MSMg01no276_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:41 2005
         (164 letters)



>mm_chr3_29491754_29492317
          Length = 564

 Score =  298 bits (154), Expect = 1e-85
 Identities = 160/162 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgacctctccctaatgtcctgataatcatcaaagtgctaccttggactcctttctatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgacctctccctaatgtcctgataatcatcaaagtgctaccttggactcctttctatt 260

                                                                       
Query: 61  ccctcctgtgtaatattttcacttaagatgttttactttctaccattagctagaagactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctcctgtgtaatattttcacttaagatgttttactttctaccattagctagaagactg 320

                                                     
Query: 121 tggtgcccaaaacagcaccttttaataggtggctacttgctc 162
           ||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 321 tggtgcccaaaacagcacctttttacaggtggctacttgctc 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)