BAC Information

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BAC

Clone NameMSMg01-276N24
Chromosome3 (Build37)
Map Location 4,725,947 - 4,726,233
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383815, LOC100039157, LOC100039167, LOC667709
Downstream geneLOC620283, Zfhx4, Pxmp3, EG620382
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276N24.T7 (MSMg01no276_n24.b1)MSMg01-276N24.TJ (MSMg01no276_n24.g1)
ACCAG414934AG414935
length786756
length of high quality
(start - end)
249 (46 - 294)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no276_n24.b1 PHD_FILE: MSMg01no276_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:53 2005CHROMAT_FILE: MSMg01no276_n24.g1 PHD_FILE: MSMg01no276_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTCCTCAAA
AATTTGGACATAGTACTACCGGAGGATCCAGCAATACCTTCTCCTGGGCA
TATATCCAGAAGATGTCTTATTTTTGTACCCCCCACCCCTGCTCCAATAT
TGTCATAAGCAGCTTTATTTATAATTACCCCCAAATGAACAAGCAAAGAG
AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGGNNNGAGACAAAT
AANTAGAGACATNNNNNNNNNNNNNNCTAAAACCAAANNATTTTTTGAAA
TTCCTAACCCCAATTAAAAGGGCCCTGGAAGGGCATTCTCCNTGGNNTGG
GGGTAAACACATTCCCCCAAAAAAACTTAACCNNTTTTTTTGATTTTTNN
NGGGGAGTGTTAGTNNNNNNNNTATNCNNNNNNNNNNNNNNCCCCCCCNN
NNNNNNNNNNTTGACGCCAAAAAGGGGGGNGATNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNACAGACGAGTAGTG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACTGTTTCCCAGGCTGGTCTTGAG
CACATATTGCAGCTTGCCTCAGGCACACACACAACAATCCTACCTCAACC
TCAGCAGAAAAAAGGAATTATATGCATTTCTCATCACACTTTGTTCCTCA
AAATATTTCATATATCAGTGTCCTCATCATCTCTCAATCTTTACCATCTA
CCAATTGGTCAAGCCAAATACTGCATATGCTTCTATAAAGTATAAAGTGC
ATCACTGTCTTGAATTACTCCTTCATATCTCATTTTAGAAAAAAATAACT
GTAATTTATTTAAAACCTTGTTTATATACCCACCCCCCCATATATATATA
TATATATATAAAGATAAAAACTGTATTCAAGATAAAAAAGAGCATACATA
ATTTCTCACCACAGTACTTTTCTGCATGCTTAGGACTGCAACAACCCTTC
CAGTTCCATGCTGCCAAATCAGTTTCTTATGCAAAATAAGACTGCCACCA
AACAGGAATGGTAATGTGTTTGTTGTCATTTTCTTTTCTTTAAGATTATT
TAAAATTATGTGTTTATTTTTCAGTGAGTGCAATTGCAGGCAAGTGATAA
AATAGAATGCTGAATTTTCTGAAGCTGGAAGTACAGATGGTTGTTAGCTG
TCTGACATGGTTTGGATGAATAGAACTCTGGTCCTCCGCATAAACATCAC
ATTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_n24.g1 MSMg01no276_n24.g1 CHROMAT_FILE:
MSMg01no276_n24.g1 PHD_FILE: MSMg01no276_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:53 2005
         (291 letters)



>mm_chr3_4725743_4726433
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gtttcccaggctggtcttgagcacatattgcagcttgcctcaggcacacacacaacaatc 64
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gtttcccaggctggtcttgagcacatattgcagcttgcctcaggcagacacacaacaatc 264

                                                                       
Query: 65  ctacctcaacctcagcagaaaaaaggaattatatgcatttctcatcacactttgttcctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctacctcaacctcagcagaaaaaaggaattatatgcatttctcatcacactttgttcctc 324

                                                                       
Query: 125 aaaatatttcatatatcagtgtcctcatcatctctcaatctttaccatctaccaattggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaatatttcatatatcagtgtcctcatcatctctcaatctttaccatctaccaattggt 384

                                                                       
Query: 185 caagccaaatactgcatatgcttctataaagtataaagtgcatcactgtcttgaattact 244
           ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 385 caagccaaatactgcatatgcttctataaagtataaattgcaacactgtcttgaattact 444

                                                          
Query: 245 ccttcatatctcattttagaaaaaaataactgtaatttatttaaaac 291
           |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 ccttcatatctcattttagaaaaaaataactgtaatttatttgaaac 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)