BAC Information

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BAC

Clone NameMSMg01-276O23
Chromosome3 (Build37)
Map Location 39,783,927 - 39,784,214
singlet/doubletsinglet
Overlap genenone
Upstream geneFat4, LOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276O23.T7 (MSMg01no276_o23.b1)MSMg01-276O23.TJ (MSMg01no276_o23.g1)
ACCAG414978AG414979
length742746
length of high quality
(start - end)
333 (385 - 717)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no276_o23.b1 PHD_FILE: MSMg01no276_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:58 2005CHROMAT_FILE: MSMg01no276_o23.g1 PHD_FILE: MSMg01no276_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAAACTGACCATATGTGGGTAGAGATGAATAAAGTGGAAGAGTTG
CATCAGCGTTACAGTTAAGTGCTCGATGTGTCTATCATTCTGAAGAACAC
AGCCAAATTCTCAGTGCCACTGCAGTGATACCTCAGACTGTGAACTATGC
ATGCTTGTATAATCATTTGACAGGAGGATTCTACTCTGATCCCTCCCTTC
TTTTGTTGTAGGAATGTCCACATTTAATCACCCAGTATGAACACCAGAGT
AGCATGAATGCAATTAATAGCTACCTCTTTCGCATTATTATTTACCAATG
AAAGTGTTTATATATATTTTGCCACTCCCCGCCACTATTTCATCTCAAAC
ATAACATAAAATTTTAAGGAGTCTGTTGCTTCACTAGTCTTGTATATAAA
AGAGAATGGGTTGGGGACCAGAGAGCAGGCATAATACTAACCTAGGCCCT
CTGCAAGTACTTGACAAATGTGTAGCCTAGTCTTCTTGTGAGATTGCTAG
CAGTGAGAACAGGGGCTGTCTCTGCTTCTGGTGTCTGCTTTTGGAACCCT
TTCCTCCACTGAGTTGTCTAATCCAGCCTTATTAGGAGAGGAGGTGCCTA
CTCTCACCTCAATTGAATATGCCATGACTGATTGATATCCACGGGAGACC
TGCCTTTTCTGGAAAAAAATGGAGAAGGAGCTTATGGGGCAG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGGGTGTTGATTTTTAAGTCCA
CGTTTTATTAAGGTCAAACACAGATGCCAAACACACGGCAATTCTTGAGT
CTAGAGGATGCACCTTCTTCCAGCACTCCTGTGATGTCAGTATTCTGAAG
GAGAATCTGAACAGCCACAGCACCAGAGAATCATTCACAGGACCCTCCCC
AAGTCCCCCTCAAGTCATACATTGTTGATTTCTGATATCCTGATATTGCA
GGCTAGTTTTATCAACAGCAGCTTTTGATTAACCACGGCACATCTACTTA
CCATGACAGGAGAAATCTTGTTTGACCACCCCCTCGAAAACTTTAGATGA
TTAGAACCATCTTGATTCTGTAAGTGGCTAACAAATAAGGAGGAGCCTGG
AGGTTATGTTGGAAGTCAAACTAAACCCAGTGACATGGATGTAGAATCAG
AAGCGCAGGCACAGATATTCTGGGCATTGTTTGTAATTAACCCTGACACC
TGAAAACCTGGCCTGTGTCCTAGTCAACAATGTATTGCCTGACATACTTT
GGCATTGGTTATTGAGAGCTCAAAATAAATAAGTTAGCTCCCCAAAGACA
CGTGAATCCTAAGGAGAACTATGAACCTGCTGCATAGTGGCCATTGCTAA
AAGCCCTTGCTTTGTCTTTATAAATCCCCACTTTCTCCAGAGGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_o23.g1 MSMg01no276_o23.g1 CHROMAT_FILE:
MSMg01no276_o23.g1 PHD_FILE: MSMg01no276_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:58 2005
         (288 letters)



>mm_chr3_39783727_39784414
          Length = 688

 Score =  487 bits (252), Expect = e-142
 Identities = 279/288 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgggtgttgatttttaagtccacgttttattaaggtcaaacacagatgccaaacacac 60
           |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 488 aatgggtggtgatttttaagtccacgttttattaaggttaaacacagatgccaaacacat 429

                                                                       
Query: 61  ggcaattcttgagtctagaggatgcaccttcttccagcactcctgtgatgtcagtattct 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 428 ggcaattcttgagtctagaggatgcaccttcttccagcacccctgtgatgtcagtattct 369

                                                                       
Query: 121 gaaggagaatctgaacagccacagcaccagagaatcattcacaggaccctccccaagtcc 180
           |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 368 gaaggagaatctaaacagccacagaaccagagaatcattcacaggaccctccccaagtcc 309

                                                                       
Query: 181 ccctcaagtcatacattgttgatttctgatatcctgatattgcaggctagttttatcaac 240
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 308 ccctcaagtcatacattgttgatttctgatatcctgatattacaggttagttttatcaac 249

                                                           
Query: 241 agcagcttttgattaaccacggcacatctacttaccatgacaggagaa 288
           ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 248 agcagcttttgattaaccacggcacatctacttactatgacaggagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)