BAC Information

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BAC

Clone NameMSMg01-277C09
Chromosome3 (Build37)
Map Location 76,106,655 - 76,106,955
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneWdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277C09.T7 (MSMg01no277_c09.b1)MSMg01-277C09.TJ (MSMg01no277_c09.g1)
ACCAG415131AG415132
length768771
length of high quality
(start - end)
364 (384 - 747)305 (75 - 379)
definitionCHROMAT_FILE: MSMg01no277_c09.b1 PHD_FILE: MSMg01no277_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:14 2005CHROMAT_FILE: MSMg01no277_c09.g1 PHD_FILE: MSMg01no277_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAACATGGATGCCACCATCATCCCTAAACTCAAGGAATTCATTGCT
ATCTTTCTGGGAAATATTTATATCTCATTCCATCCTCAATTTTATAATAA
AAATCCTATTTTTACTATACAGAATTGAGACTAAGACTGGGGGAATAGCT
GCTGAATCACTCATCTCTGCCTGTGGCTCTAGGTTACTTTCATTTCCACC
TAGAGCGAGTGACTGTAACACACATTTCTCTTGAATTCATGAACGGCCTT
CACTTGAATATCATTGGTATCATACAATTTCTGGATATCAAGTGGGATCT
TACTAGATCTTGTCTTTTTTCTACACACCCGCTTAATCAAGGGAGGAAGA
AAAAAAGGAATAGTAAATAGATAAAGAAAATAGTAAATACTAAGAATAAT
TGTAGAAATGATATCACAAGGTGCTTGTGCCAAAGAAGCAGGCCTTGGGG
CCTTTCAGTACTCATACTGGGGCCCACAAGAGGCCATTGCCTTGCGCTCT
ATCAGGTTTTTCTTTCTTGTCATTGGGGTCACAGGCATCTTGACCTTAAT
GTGAGGTGTCTCTAACAATACATAGTATGTTCTCACTGATAACTGGATAT
TAGTCAAAAAGTTCTAAATACTTAAGATACAACTCACAGACTATATTAAG
CTTACCATGAAAGAATACTCAAGTATTGATGCTTCCATCCTACTTAGAAT
GGGAAACAAAATAGTAAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTCTTAAAAATTTTGACTTTGGTGA
ATTATAAAAATTTAAGAAAAAATGCACATGTTATAAATCCCTATTTTCTC
TAAATATACATATGCAAATACTACCATACATATATTTTTATCCTGAGCTA
ACACCCCTTTAGGAAGGAGTATTGAATACATAAACTTAATTATGCTCATT
TTTAAACATTTGAACCTACTATAAGGTAGTTATTTTTAATATATGTTATA
TATACACAAATGTATATATATATATATATTTGTGTTTATGTACATGGATA
TGTATATATATATATGTTTTTTTATACACACGCGCACCGTTCTAGTGAAT
ATAAACAAAATAAAGGCAACCCATTACAGGGATAATGAGAATCTGTTTGC
TGGGTCTGTGAAAGTTGACCCTAAGTTTTTAGGTGAATAGCTGGAAATAT
TATTTACTGAGCAGATTCCCTTTGTACCTAAATTACAAGTACCTTGAAAT
GTAAGATTTACAGTCATTACTACAGTACAGAGACCTTATTTAATCAGTCA
TTAGATTTACTAGATACTCATGAATATATAAGCTTTTCATGAGTCCAGGA
ACTATATGCATTCTGAACAGAGATGGAAAATGTTGAATTTAAAAGCAAAA
AGCATCCCTGTCTCAGAAGCTTGTTTTGTAGAACACGACAAAAATCTTCC
CTGCCATGGCAATAGCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_c09.g1 MSMg01no277_c09.g1 CHROMAT_FILE:
MSMg01no277_c09.g1 PHD_FILE: MSMg01no277_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:14 2005
         (305 letters)



>mm_chr3_76106542_76107246
          Length = 705

 Score =  516 bits (267), Expect = e-151
 Identities = 287/301 (95%), Gaps = 12/301 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttaaaaattttgactttggtgaattataaaaatttaagaaaaaatgcacatgttat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 414 attcttaaaaattttgactttggtgaattataaaaatttaagaaaaaatgcagatgttat 355

                                                                       
Query: 61  aaatccctattttctctaaatatacatatgcaaatactaccatacatatatttttatcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aaatccctattttctctaaatatacatatgcaaatactaccatacatatatttttatcct 295

                                                                       
Query: 121 gagctaacacccctttaggaaggagtattgaatacataaacttaattatgctcattttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gagctaacacccctttaggaaggagtattgaatacataaacttaattatgctcattttta 235

                                                                       
Query: 181 aacatttgaacctactataaggtagttatttttaatatatgttatatatacacaaatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aacatttgaacctactataaggtagttatttttaatatatgttatatatacacaaatgta 175

                                                                       
Query: 241 t------------atatatatatatatttgtgtttatgtacatggatatgtatatatata 288
           |            |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 174 tgtatatatatatatatatatatatatttgtgtttatgtacatggatgtgtatatatata 115

            
Query: 289 t 289
           |
Sbjct: 114 t 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)