BAC Information

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BAC

Clone NameMSMg01-277D21
Chromosome3 (Build37)
Map Location 125,869,692 - 125,869,965
singlet/doubletsinglet
Overlap genenone
Upstream geneNdst4, Ugt8a
Downstream geneArsj, Camk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277D21.T7 (MSMg01no277_d21.b1)MSMg01-277D21.TJ (MSMg01no277_d21.g1)
ACCAG415199AG415200
length723716
length of high quality
(start - end)
274 (378 - 651)296 (74 - 369)
definitionCHROMAT_FILE: MSMg01no277_d21.b1 PHD_FILE: MSMg01no277_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:20 2005CHROMAT_FILE: MSMg01no277_d21.g1 PHD_FILE: MSMg01no277_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTGTCTTGTCACAATATTCCTATCCCTTGCTCTCCGAAGATATG
AATTTAAAGTCTGAAAATTATATGCCTGCTTCCCTACCACGAAGATGCCA
GTAGTGTTATCAATTGCCTTTTCTCAGAGAAATGACACAATAACTGTTCT
ATGGTTCAGATGAGATTGACAACGTGGCACAGAAAGTGAAAGATAATGAC
TTTAGCCTCATGATTTGTGGAAGCACATTCATGTCCATTCTCCCCAGGAT
CCCACAATAATATATTATGCAGCTGGTCTTTTGCTGTAGATTGTAGAAAG
ATATATTGGATCATACTTCTTGCTGAGCATAACAACAGGCCTTTTATTAA
ATATAGAATCATGATCTAATGTCAGTAATAAAAACTGCTCAGTGATTCAA
TTCCCCAGCAACATTTTATGTTTTGAAAAATAGGTGACTCAAAAGATTGG
GTGTAACAGAATTAGCCAATGCTAAACTGGTCATATGCATATGTTTATGA
AGAAAATATCTTAAACAGCTCAGTTAAATATATGTGAGAAACCGAAATAA
TTGACTGTAAAAAATAAGTGTACTTGGAGGTACAGTTCAATCCAGAAGAC
CTATAAAATAAAATTGCCCTAAAGAGGGAATTTTCAAATAAAAGAAGGAA
AAGACATACAGTATTTTTATGAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTTGTCTTGTTCTGAATCCTAGAGTA
CATCCTCAAATTGTTCTCTTCTTACCATAATAATGACAATTGGTTTGTTA
TAAATAGCCTTTATTATACTGAGATATGTTTTCTTTATCCCCAGTCTCTT
TAGTTTATTTTCCCATCAAAGTATATTTAATTTTGTCATGGGACTTTTCT
ACATTCATTGGAATGATCATGCAATTTTTGACTTTTGTTTCATTGATACA
ATGAATTACATTTATTGACTTCTATTTGTTGAACAAATCCCAAATCCTTG
AAGGAAGCCAACTTATTCTTTATGAATGACCATCTCCATATTTTTTATTT
TTTATTAGGTATTTACTTCATTTACATTTCAATTGCTATTTCCAAAGTCC
CCTATACCTTCCCTGCCCCCTGCTCCCCAACCCACCCACTCCCACTTCTT
GGTCCTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGACCAAGG
GGCCTCTCTTCCCAATGATGGCCATCTTCTAGTACATATGCATCTAGAGA
CACGAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCCACTTATAGA
TTTGCAGACCCCTTCAGCTCCTTAGGTACTTTCTCTAGCTCCTCCATTGN
NGGCCCTGTGTTCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_d21.b1 MSMg01no277_d21.b1 CHROMAT_FILE:
MSMg01no277_d21.b1 PHD_FILE: MSMg01no277_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:20 2005
         (274 letters)



>mm_chr3_125869492_125870165
          Length = 674

 Score =  530 bits (274), Expect = e-155
 Identities = 274/274 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataacaacaggccttttattaaatatagaatcatgatctaatgtcagtaataaaaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataacaacaggccttttattaaatatagaatcatgatctaatgtcagtaataaaaactg 260

                                                                       
Query: 61  ctcagtgattcaattccccagcaacattttatgttttgaaaaataggtgactcaaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagtgattcaattccccagcaacattttatgttttgaaaaataggtgactcaaaagat 320

                                                                       
Query: 121 tgggtgtaacagaattagccaatgctaaactggtcatatgcatatgtttatgaagaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggtgtaacagaattagccaatgctaaactggtcatatgcatatgtttatgaagaaaat 380

                                                                       
Query: 181 atcttaaacagctcagttaaatatatgtgagaaaccgaaataattgactgtaaaaaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcttaaacagctcagttaaatatatgtgagaaaccgaaataattgactgtaaaaaataa 440

                                             
Query: 241 gtgtacttggaggtacagttcaatccagaagacc 274
           ||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtacttggaggtacagttcaatccagaagacc 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)