Query= MSMg01no277_f02.b1 MSMg01no277_f02.b1 CHROMAT_FILE:
MSMg01no277_f02.b1 PHD_FILE: MSMg01no277_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:26 2005
(671 letters)
>mm_chr3_115256124_115257192
Length = 1069
Score = 1197 bits (619), Expect = 0.0
Identities = 658/671 (98%), Gaps = 2/671 (0%)
Strand = Plus / Plus
Query: 1 tgcctggaattgctccattaaaggccacatccacagagcaagaaaacatttgttgaccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 201 tgcctggaattgctccattaaaggccacatccacagagcaagaaaacatttattga-tgc 259
Query: 61 ttaatccagtgcgctcagtgctgcaagggcagcagcgtcccagcagtttaagctttgcca 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttaatccagtgcgctcagcgctgcaagggcagcagcgtcccagcagtttaagctttgcca 319
Query: 121 gtgtccgcaattaattccacgaaaaataaaaattagatgtgcatgaggacttggggccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgtccgcaattaattccacgaaaaataaaaattagatgtgcatgaggacttggggccaa 379
Query: 181 caacaaaatgaagtcagaacagcttagaagtagacagccaatatggagtcgttattttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caacaaaatgaagtcagaacagcttagaagtagacagccaatatggagtcgttattttga 439
Query: 241 ataggtggccaatctctgggtttatgttgtgcgggtatgtactgcatgcctgtccttata 300
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 440 ataggtggccaatctccgggtttatgttgtgcgggtgtgtactgcatgcctgtcctt-ta 498
Query: 301 agtgtatacattgctctgcgctgtattcttgctctacagagtgaagtccacgctgcggta 360
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 499 aatgtatacattgctctgcgctgtgttcttgctctacagagtgaagtccacgctgcggta 558
Query: 361 gaatcacctctggcctctctccccatcccaagtgcatgatgcagcacatataatgaggca 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 559 gaatcacctctggcctctctccccatcccaagtgcgtgatgcagcacatataatgaggca 618
Query: 421 acattataaagaccttgggtattttcagtgtcatatttcagaataagactatttccaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acattataaagaccttgggtattttcagtgtcatatttcagaataagactatttccaaat 678
Query: 481 gccagcgggtattttccttttcttctttcttcaatgcaagagtagagttttaacaaaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gccagcgggtattttccttttcttctttcttcaatgcaagagtagagttttaacaaaaat 738
Query: 541 ttcacaacaatgtagccctctaaattgcctctggtgaaatgtgtgctacaactatagaga 600
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 739 ttcacaacaatgtagccctctaaattgcctctggtgaaatgtgtgctacatctatagaga 798
Query: 601 actttgagctaacaggccccggacatcaaaagcgagctgtagccatgcactagtggaagg 660
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 799 actttgagctaacaggtcccggacatcagaagcgagctgtagccatgcactagtggaagg 858
Query: 661 tatctgctaag 671
|||||||||||
Sbjct: 859 tatctgctaag 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1069
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1059
Effective search space: 699999
Effective search space used: 699999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no277_f02.g1 MSMg01no277_f02.g1 CHROMAT_FILE:
MSMg01no277_f02.g1 PHD_FILE: MSMg01no277_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:26 2005
(608 letters)
>mm_chr3_115389629_115390638
Length = 1010
Score = 1141 bits (590), Expect = 0.0
Identities = 605/610 (99%), Gaps = 2/610 (0%)
Strand = Plus / Minus
Query: 1 ctagttttcagttcactcactctgattcacagttgctgttgaagacatgacctctcaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ctagttttcagttcactcactctgattcacagttgctgttgaagacatgacctctcaggt 751
Query: 61 tcctgctgccatgcctccctgccaggaacatcaccccacaaatcagaaggatcactgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tcctgctgccatgcctccctgccaggaacatcaccccacaaatcagaaggatcactgtgt 691
Query: 121 gccaattaaacaaacactttttt-aaaaaaagaatgcctagttatttatgatgagccact 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 690 gccaattaaacaaacacttttttaaaaaaaagaatgcctagttatttatgatgagccact 631
Query: 180 tctccacattctcttgaatacaaatggatttttctattaggttgaaaatgatgattcaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tctccacattctcttgaatacaaatggatttttctattaggttgaaaatgatgattcaca 571
Query: 240 gtggttatagattaatgtggaggaataaaaggggagtccacggtagcaagttaaactaca 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 570 gtggttatagattaatgtggaggaataaaaggggagtccacagtagcaagttaaactaca 511
Query: 300 ctggagtgcatgttagctctttcatctcccggacacacccagcactggtttcctgggctg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctggagtgcatgttagctctttcatctcccggacacacccagcactggtttcctgggctg 451
Query: 360 gtttgtctttaagagagagcagggaagattcttttagggcttccaggctcataacaaagg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gtttgtctttaagagagagcagggaagattcttttagggcttccaggctcataacaaagg 391
Query: 420 aaaacctgatccagttcctttttcaggggaaggagggtagatccttctgtttggaagagg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aaaacctgatccagttcctttttcaggggaaggagggtagatccttctgtttggaagagg 331
Query: 480 ctggggttagttccttaaatgtttctgttatttttagatcttatttttctttctttc-tt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 330 ctggggttagttccttaaatgtttctgttatttttagatcttatttttctttctttcttt 271
Query: 539 ttttttctaccctcagtttccatgacattcagcaagtgtcactaaaggtatcacagactc 598
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 270 ttttttctactctcagtttccatgacattcagcaagtatcactaaaggtatcacagactc 211
Query: 599 cttgaagata 608
||||||||||
Sbjct: 210 cttgaagata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1010
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1000
Effective search space: 598000
Effective search space used: 598000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
