BAC Information

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BAC

Clone NameMSMg01-277F13
Chromosome3 (Build37)
Map Location 89,177,895 - 89,178,129
singlet/doubletsinglet
Overlap geneDcst2
Upstream geneBglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1
Downstream geneZbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277F13.T7 (MSMg01no277_f13.b1)MSMg01-277F13.TJ (MSMg01no277_f13.g1)
ACCAG415274AG415275
length725727
length of high quality
(start - end)
237 (133 - 369)234 (129 - 362)
definitionCHROMAT_FILE: MSMg01no277_f13.b1 PHD_FILE: MSMg01no277_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:28 2005CHROMAT_FILE: MSMg01no277_f13.g1 PHD_FILE: MSMg01no277_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGACATTCCGATCTACCCATTGAGACCGCGCCTCAAAACAGAA
AAGAGATAAAAGTGAATTTTTGCCCACCTTAGCCAGCTAAGATCCTCCCG
AGGCCAGGGGAGCCTCCCCCCCCCCCAGTCCTTCCCACCCTGCCTCTCAC
AGCGAGGTCTCACACCCAGCACAAGCACACACACCCTTGGGCTTTATTTA
CCCTCCTAAATGTTTTACATTCTCCAAACTCAAAGGTCTCTGCTTCCTCG
CCTCCCTTAGCCTGTGCCTAACTAACCCCAGGCTGCCCCGAACCCCAGCT
CATTTCTCTCCTTTTCTGTGAAGCCTCCCCCGCTTGCAGATTGGTTGGGG
TTTTGTTTGTTTTGTACCCACCCCACCCAATTAAAAGACAGGCTTTCTCT
GTGTAGCTTGGCTGGCCTTGAACTCACAGAGATTTGCCTGTCTCTGCCTT
CCTAGTGCTGGAAGTGTCTTCCGAGTGCCACTCCACACCCTGCTCTGTGA
AGTTTCTTTTTTCTTTTTTGAGGGGGGATGCGGAGTCTTAACTACCTCCC
CATATTTTAATATCCGTGTTCTTACCCATCGATGTGTCACTCTTCTGAAA
TTATCATTTTTCTCTCTTTGCCTAATCTCCTAGCCCTGTATCCTTATCGC
TGATTTTATTTCTTTCTCATTCTCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGTCACGGCTACACAGAA
AAACCCTGTCTCAAAAAATTTTAACCCAAACAAAAAAAACCCAAGGTCAG
TGTGGTAGCTCAGAGCAAATAAAGGCACTTGCCACCAAGCCTAGTGACTT
GAGTTTAATCCCTGAAACTCATATAGTGGGAGGAGAGAATCTATTGTTAC
AAATTGTCCTCTGGAGTGACCTCCATATAGGCACAGTGGCACTTGTGTGA
CCACATACATATACTACTTAAATAAGTACATGTAAGAAAAGGAAAGAGGG
CTGGAGAGATGGCTCTTTGTTAACACCACCGGCTGCTCTTCCACAGGTTC
CTAGTTCAATTCCCAGCACCCACATGGCAACTCACAACTGCCTGTAATTC
TAGTTCCAGGGGACCTTACACAGACATATATGCAGTTAAACCACCAATGT
ACACAAGATCTAAATAAATAAAAATAAATAAATCTTAAGAAAAGAAAGAA
AGAAGGAAGGAAGGAAAAAGAAAGAGAGAAAGAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGATAGATAGAAAGAA
AGAAAGAAAGAAAGAAAGGAGAGATGAAATGAAAACAAAAGAAAAGCCAG
ACCCCCCTCTCTGCTGCTCTAATCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_f13.b1 MSMg01no277_f13.b1 CHROMAT_FILE:
MSMg01no277_f13.b1 PHD_FILE: MSMg01no277_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:28 2005
         (237 letters)



>mm_chr3_89177695_89178332
          Length = 638

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%), Gaps = 1/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagctaagatcctcccgaggccaggggagcct-cccccccccccagtccttcccaccct 59
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 435 ccagctaagatcctcccgaggccaggggagcctccccccccccccagtccttcccaccct 376

                                                                       
Query: 60  gcctctcacagcgaggtctcacacccagcacaagcacacacacccttgggctttatttac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gcctctcacagcgaggtctcacacccagcacaagcacacacacccttgggctttatttac 316

                                                                       
Query: 120 cctcctaaatgttttacattctccaaactcaaaggtctctgcttcctcgcctcccttagc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cctcctaaatgttttacattctccaaactcaaaggtctctgcttcctcgcctcccttagc 256

                                                                  
Query: 180 ctgtgcctaactaaccccaggctgccccgaaccccagctcatttctctccttttc 234
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctgtgcctaacaaaccccaggctgccccgaaccccagctcatttctctccttttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 638
Length adjustment: 9
Effective length of query: 228
Effective length of database: 629
Effective search space:   143412
Effective search space used:   143412
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)