BAC Information

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BAC

Clone NameMSMg01-277M17
Chromosome3 (Build37)
Map Location 47,562,199 - 47,562,572
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545517, LOC383849, LOC383850, LOC100039426
Downstream geneLOC666202, LOC666208, 1700018B24Rik, LOC100039404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277M17.T7 (MSMg01no277_m17.b1)MSMg01-277M17.TJ (MSMg01no277_m17.g1)
ACCAG415595AG415596
length758763
length of high quality
(start - end)
374 (385 - 758)687 (77 - 763)
definitionCHROMAT_FILE: MSMg01no277_m17.b1 PHD_FILE: MSMg01no277_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:59 2005CHROMAT_FILE: MSMg01no277_m17.g1 PHD_FILE: MSMg01no277_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTATACAAAATACTTCATCACTGCCAGTTCTGATGATGTCTGAAT
ATTTGACAATTAACCCTTGTGAGCAGTGTGTTCTGGCTTTACACTTCCGT
GAAAACAGTAATATTTTTCCATAAAGGAATTTTTTTTTTACTACCTGATT
CTACGACTTCATGGATGCTACTGATATCATGAAATCCTCCCTTTCGTTTT
GCATTGTGTATTCTTAATGTCCTCTGAAGGCCACCAAACACTCCTTAATG
CTTTTAATCTTGCCTCCCTGTTTGTCTTGCTTGTCCCACCACTTAGTCAT
CTTTATTACATTCTGATTAATTACCCCCCACCGCATAATTTGCTAAATAA
ACTATTCATCACTATTCCTAATATTATTGAAGATTTAAAGAGTCAATAGA
TCATGTTCAGTGCTTGGTCTTGCATTTAGTTTTGTGTGAGTGCATTGCAT
TCATGTGTATGCACTTGTATCAGAAGTCCAGAGTATAGTGTGAAGTCTTG
CTCTTTTGCTGCTGTCTAACATTTTTGTTTGTGTTTTGTTTGGTTTGTTT
GGTTTGGTTTTGAGACAGGATTTCTCTTTACATTTGAGATCACCACTAAG
GATCAATCAAGCAGGTCAGAAAGCTGTAAGAATCTGAATGTTTTGCCTCT
AAACCCTGCAACTCTACAACTAGGGTTATAATGAGTATGCTACCTCCTCT
CTCTCTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACCTCCTTAATCATCAGGGAAATGCA
AATCAAAACAACACTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTAAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCAATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCACTCCTGGTTTTATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCTCTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TAAGATAACACATTCACAAAGAAACTCACAAAATATGTACTCACTGATAA
GTGGATATTAGCCACAAACCTAGGATACTCAAGATATAAGATATAATTTG
CTAAACACATGANACTCAAGAAGAATGAAGACTGAAGAGTGGACACTATG
CCCCTCCTTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_m17.b1 MSMg01no277_m17.b1 CHROMAT_FILE:
MSMg01no277_m17.b1 PHD_FILE: MSMg01no277_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:59 2005
         (374 letters)



>mm_chr3_47562185_47562958
          Length = 774

 Score =  692 bits (358), Expect = 0.0
 Identities = 370/374 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataatttgctaaataaactattcatcactattcctaatattattgaagatttaaagagtc 60
           |||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||
Sbjct: 388 ataatttgctaaataaactattcatcactattcctaatattattgttgttttaaagagtc 329

                                                                       
Query: 61  aatagatcatgttcagtgcttggtcttgcatttagttttgtgtgagtgcattgcattcat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 328 aatagatcatgttcagtgcttggtcttgcatttagttttgtgtgagtgcattgcatgcat 269

                                                                       
Query: 121 gtgtatgcacttgtatcagaagtccagagtatagtgtgaagtcttgctcttttgctgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtgtatgcacttgtatcagaagtccagagtatagtgtgaagtcttgctcttttgctgctg 209

                                                                       
Query: 181 tctaacatttttgtttgtgttttgtttggtttgtttggtttggttttgagacaggatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tctaacatttttgtttgtgttttgtttggtttgtttggtttggttttgagacaggatttc 149

                                                                       
Query: 241 tctttacatttgagatcaccactaaggatcaatcaagcaggtcagaaagctgtaagaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 tctttacatttgagatcaccactaaggatcaatcaagcaggtcagaaagctgtaagaatc 89

                                                                       
Query: 301 tgaatgttttgcctctaaaccctgcaactctacaactagggttataatgagtatgctacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  tgaatgttttgcctctaaaccctgcaactctacaactagggttataatgagtatgctacc 29

                         
Query: 361 tcctctctctctct 374
           ||||||||||||||
Sbjct: 28  tcctctctctctct 15


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)