BAC Information

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BAC

Clone NameMSMg01-277M23
Chromosome3 (Build37)
Map Location 29,047,778 - 29,048,085
singlet/doubletsinglet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277M23.T7 (MSMg01no277_m23.b1)MSMg01-277M23.TJ (MSMg01no277_m23.g1)
ACCAG415607AG415608
length651736
length of high quality
(start - end)
312 (45 - 356)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no277_m23.b1 PHD_FILE: MSMg01no277_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:00 2005CHROMAT_FILE: MSMg01no277_m23.g1 PHD_FILE: MSMg01no277_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTAACCTGTTCCCATGCTTTCATATTAAGATTTATCTTAAATTTA
GATCTTTTTGAGTCATTTTCTTACAACTCAACCCATTAGCACCCATTAGT
ATCAAAAGGTTCTTATGGGATTTGTGAGACTATTTTAAATCTTTGAAAAC
ATGAGGTCTCCCTGAAGCTGGGACGCTTAGAAAGCATGGTGGACGCTTGC
TTTTCTCCCTTCTCCCAGCCTGCTGGGCTGTNCCGCATTCAAAGGCTGGA
GTAAAGTTAAAGAATCTGTGGTATCAAAGGGTTTCACCGCGACAAGAGCA
GGTCAGATGTTTTGNATAAGTTCCCCCCCCCCCCGCGAATAAAGGAAGGT
TAAATTTTGGGAAACCGGCCCGTTTTCCCAATGAAAAAAAAAAGGTTCTC
CGGGGGGGGGTTTTAAGTTTTTTCAAAGGGGGGGAAACAATTTCATATTT
TCCGGGGGGGGGGGAAAAAAAAAATTGTTGGGGGGGTGTCTTCTTTCATC
CCCCCCCCCCTCAAAACAAATAATATTCTTCTTCTCCCCTACCCTCAAAC
CCTCCCTCCGAACTGTTATTATTATTATCTTTAAATTTACGTATGAACAA
G
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGTCTGGCTGGGAGTGAGTGCCAG
CAGGGAGAGACAAGGCCTTTGTACCGGTTTGAATAGGTTTGGCCCCCATA
GACTAGTGTATTTGACTGCTTAGCCTATAGGGAGTAACACTATCATTACG
TCTGGCCTTGTTAGAATAGGTGTGGCCTTTTGGAGGAAATGTGTCACTGT
TTGCCTTCAGAATAAGATGTAGGACTCTCAGCTCCTCAAGCACCATGCCT
GCCTGGACACTGCCATGCTTCTGACCATGATGATAATGGACTGAACCTCA
GAACCAGTAATCTANCTCCTTTTCCCCGCCCCCCCTTTATAGGAGTTGCC
AAGATCAAGGATCTCTTCACAGCAGTGAAAACCCTAAGACAGCTTTCTCT
GAGTATCTTAGTATTACAGCTTTTTTAAGATGAAGGCTTTCTCCAATGAG
TTTCAGTGAACAGCGCTCTGAGACAATCTTAGCTTGTGCATATTTTTTTA
TTTGGGGTGGGCTTGTGTTGATATGCTATATTCAGGGTGAACCAGGGTTA
TATATGGACTTTGGAAAGTGGGAAGGAGTTTAAATGAAATCATTGGCTGG
AGTTTAAAGTCCTGTGAATGTCACATCTGTATGGAGAGGCATTCCAGGAA
CCCCAGGTACTTGCGGGGAAGGTTCTTATCAGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_m23.b1 MSMg01no277_m23.b1 CHROMAT_FILE:
MSMg01no277_m23.b1 PHD_FILE: MSMg01no277_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:00 2005
         (312 letters)



>mm_chr3_29047574_29048285
          Length = 712

 Score =  536 bits (277), Expect = e-157
 Identities = 301/309 (97%), Gaps = 2/309 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattaacctgttcccatgctttcatattaagatttatcttaaatttagatctttt 64
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattcattaacctggaaccatgctttcatattaagatttatcttaaatttagatctttt 453

                                                                       
Query: 65  tgagtcattttcttacaactcaacccattagcacccattagtatcaaaaggttcttatgg 124
           |||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgagtcatttacataaaactcaacccattagcacccattagtatcaaaaggttcttatgg 393

                                                                       
Query: 125 gatttgtgagactattttaaatctttgaaaacatgaggtctccctgaagctgggacgctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gatttgtgagactattttaaatctttgaaaacatgaggtctccctgaagctgggacgctt 333

                                                                       
Query: 185 agaaagcatggtggacgcttgcttttctcccttctcccagcctgctgggctg-tnccgca 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 332 agaaagcatggtggacgcttgcttttctcccttctcccagcctgctgggctgat-ccgca 274

                                                                       
Query: 244 ttcaaaggctggagtaaagttaaagaatctgtggtatcaaagggtttcaccgcgacaaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttcaaaggctggagtaaagttaaagaatctgtggtatcaaagggtttcaccgcgacaaga 214

                    
Query: 304 gcaggtcag 312
           |||||||||
Sbjct: 213 gcaggtcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)