BAC Information

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BAC

Clone NameMSMg01-278A05
Chromosome3 (Build37)
Map Location 11,586,434 - 11,586,730
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670564, LOC383826, EG667978
Downstream geneLOC667999, EG621965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278A05.T7 (MSMg01no278_a05.b1)MSMg01-278A05.TJ (MSMg01no278_a05.g1)
ACCAG415752AG415753
length712721
length of high quality
(start - end)
484 (45 - 528)297 (77 - 373)
definitionCHROMAT_FILE: MSMg01no278_a05.b1 PHD_FILE: MSMg01no278_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:14 2005CHROMAT_FILE: MSMg01no278_a05.g1 PHD_FILE: MSMg01no278_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAATTATCACCGCAGCAGCCTTATAGGATCCTTAATAGGATGTTA
AAACTTTACTTTGAAGTGAACAAAGATGATTTTTACATTCATGTTTTTCT
TGCCAAAGAACGGCTATGGACACATTTAATAACAATAACTACAATAAGTA
GCTAATATTTGATTACCACCAATTACAATCGATACCAAAAGATTACAGAA
GTTTCCTCTACTTTCTGTTAAAGCCTTTTAGTTTCTCAGCAGTTAATTTG
AATCTCACTTGATAGCACCTAACAAAGGCTTAAGTTCTCCTGTGGTGAGT
TTAAGGTGAGGTCTTAGCCAATTAATATTTCCTGGAAGCTTTCGAAAATA
ATTTGAAGTAAGCAAATCATCAATTTTTTAAAATTTTCTTATACCACAAC
TTTTCTAGGATAACTAAAATCCTAAATATTAAAAAAGATATTGCCCCTGA
ANCNTTTTTTTTTTTTTTTTTTTTTTTTTGGAATTCAAGACAAGGTATCT
CTGTATAGCCCTTCTGGCTGTCCTGAAACTCACTTTGTATATCAGTCTGG
CCTCGAACTCATAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATCAA
AGGCATGTGCAAACAGCGCCCTCCCAGCTCACCTCTGAATCTTATGGAGC
AACAACTACTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTCAGTTTACATTCTTCCAA
TTGACTAGCATCTCCCAAGATAAGTGCCAGCTGGGATGAAAAGATGGACT
AATAATTGTAGTGCCCTGCAGATGCTGCCTGTCTTTCATCTTCATCCTTC
TACTGAGAGTATCAATGGTTCCATCACCAATTTGGATATCATGATAATAG
TTGACTCAAGGAGTTTACGTGGCTAGAGGACTAAGCTAATCTCTTTTCTA
GCATCTCAAAAGAAATGATTATATTTTCTCAGAATAAAAAATAATTCTAA
AACATCATTTTTAAAGATAAAATATCTATGTTTTGCTCATAATTTTAGAA
GCTCCTCTCTTTGATCAGTTAGTATTTCTACTTTAGCCTGTAACAAGTAA
ATACTAACAACAAAACTCTTCATAAATAGACCAATAAGTATCAGAGAGAA
GTAGTGTGTGTGCTGGGGGTGGTGGTTGTATGTATAGGATTCTATAGTAT
GCTTTATCTGCATGCTCCTAAGAACCTAACAATCACAGAGTAGGCCTCAG
TCTTTACTGTCCAACACTGTCCCAAAGTACCTTATCACGACTTTATCACT
TTGTGCCTATGGGGCACAGTCTTGATTCCAACAAATCCAGTTATGATGAC
ATAAATCTCCATCCTAGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_a05.g1 MSMg01no278_a05.g1 CHROMAT_FILE:
MSMg01no278_a05.g1 PHD_FILE: MSMg01no278_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:14 2005
         (297 letters)



>mm_chr3_11586234_11586930
          Length = 697

 Score =  567 bits (293), Expect = e-166
 Identities = 296/297 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttctcagtttacattcttccaattgactagcatctcccaagataagtgccagctggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttctcagtttacattcttccaattgactagcatctcccaagataagtgccagctggga 260

                                                                       
Query: 61  tgaaaagatggactaataattgtagtgccctgcagatgctgcctgtctttcatcttcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaaagatggactaataattgtagtgccctgcagatgctgcctgtctttcatcttcatc 320

                                                                       
Query: 121 cttctactgagagtatcaatggttccatcaccaatttggatatcatgataatagttgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctactgagagtatcaatggttccatcaccaatttggatatcatgataatagttgact 380

                                                                       
Query: 181 caaggagtttacgtggctagaggactaagctaatctcttttctagcatctcaaaagaaat 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaggagtttatgtggctagaggactaagctaatctcttttctagcatctcaaaagaaat 440

                                                                    
Query: 241 gattatattttctcagaataaaaaataattctaaaacatcatttttaaagataaaat 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattatattttctcagaataaaaaataattctaaaacatcatttttaaagataaaat 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)