BAC Information

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BAC

Clone NameMSMg01-278C18
Chromosome3 (Build37)
Map Location 50,045,935 - 50,046,230
singlet/doubletsinglet
Overlap genenone
Upstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667, Ccrn4l
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278C18.T7 (MSMg01no278_c18.b1)MSMg01-278C18.TJ (MSMg01no278_c18.g1)
ACCAG415870AG415871
length673694
length of high quality
(start - end)
324 (10 - 333)---
definitionCHROMAT_FILE: MSMg01no278_c18.b1 PHD_FILE: MSMg01no278_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:26 2005CHROMAT_FILE: MSMg01no278_c18.g1 PHD_FILE: MSMg01no278_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATCGGGAGAGGATCCGCGGAATTCCCTTTTCGTCTGAAAACAAG
CTTCCTGAATTTTAGAGGTGTAATTTCAGACAACCTTATTCAGCCCTTAA
CTAAATTGGGGCACTTTTACAAACATCTTAAAGGATAAAGACATCAAATT
TATAGCTAATAATAGACAAGATTGAAGAACAAAAATAAAAGTTCATTTTC
AGATAAAATGGAGGTTTCACAACATTATCAATGAGACAGGTGACAGAGTA
ATTGAGACTGAAATATAATAGATATCACAAACAAATTTATAGGTTAAAAT
CGTCAAAATAACAACAGCCCAAATTCCCACATTCTTTTGAACACCCTCCC
CAATTTAAAATAGTTTTTAAAATAAATAACTAGAAATGACATGTAGCAAA
AGTCTTTATATGACTTTGGATAATACTATTTGCCTTATTAAAACAAAGCA
ACATATATCCTGAGCTTCTTTAATTGTTTCATAATCTCTTGCTTAATTCT
CCTCAACATACTACCACTGGGAAATAGTTTCTCTACAAGGGGTCCTGTTA
AAACAACACAGTCGAAGGGTTTGGATCGCATAAATTAACAAGCAAGAAGA
GAACAGTTGATCACATTTAAAACTTTATATATTGATTCACAGGGCACTTA
TTCAAAGTATTCACATGGGCCAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAACTCTTAATTACCCTAAGCTG
AAAGAATATGGAACGTTTGGACATAGTCCATACCTTTAGACTGAATCCCT
AGTTGAGGAAACGCTGTGTAGAAATGCTGTACACCTTTAGTCTAGCCAGT
CTTGATACACAGACAGAGGGATCTCTGAGGTACACTGCCAGCCACATCTA
CAGAGTGAGTTCCAAGACAACCTGGGCTACCTAGAGAAACACTGTCTCTG
ATCAGAAAAAAGAATCTGCTTGGCCTAACCTGCTCTTCCTTGACTGAGAA
CACTTTTTATTTTCCCTAACTACCCCACAACTGAGCATAATCGGATCGTA
TATTCTGTTACTTTAAAAATAAAAAGATACCATTTTGTTGAAAAGTTAAC
TTTTATAAAATATATTCTTATTACAATATCCCCTCTTTCTATTCTTCACA
GTTCCTCTCCACTTCTCCTATTCTGATACGCCTTTTTATCCCTAGAAAAC
CAACAGGTTTCTGAAGGATACTAATAGAGATCTTATATGATAAGAGGAAT
AATCTTTGGAATAGGATGTAATACAGTAGAAGAGGATCCCTAGTAAAGGC
ACACTATAAGATATTGATACGGAGACCCCCTTGTTCACGCAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_c18.b1 MSMg01no278_c18.b1 CHROMAT_FILE:
MSMg01no278_c18.b1 PHD_FILE: MSMg01no278_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:26 2005
         (324 letters)



>mm_chr3_50045707_50046430
          Length = 724

 Score =  549 bits (284), Expect = e-161
 Identities = 293/296 (98%)
 Strand = Plus / Plus

                                                                       
Query: 29  gtctgaaaacaagcttcctgaattttagaggtgtaatttcagacaaccttattcagccct 88
           |||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||
Sbjct: 229 gtctgaaaacaagcttcctgaattttagaggtgtaatttcagacaaccttaaacagacct 288

                                                                       
Query: 89  taactaaattggggcacttttacaaacatcttaaaggataaagacatcaaatttatagct 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 taactaaattggggcacttttacaaacatcttaaaggataaagacatcaaatttatagct 348

                                                                       
Query: 149 aataatagacaagattgaagaacaaaaataaaagttcattttcagataaaatggaggttt 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aataatagacaagattgaagaacaaaaataaaagttcattttcagataaaatggaggttt 408

                                                                       
Query: 209 cacaacattatcaatgagacaggtgacagagtaattgagactgaaatataatagatatca 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cacaacattatcaatgagacaggtgacagagtaattgagactgaaatataatagatatca 468

                                                                   
Query: 269 caaacaaatttataggttaaaatcgtcaaaataacaacagcccaaattcccacatt 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 caaacaaatttataggttaaaatcgtcaaaataacaacagcccaaattcccacatt 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)