BAC Information

Click to search

BAC

Clone NameMSMg01-278G24
Chromosome3 (Build37)
Map Location 142,166,864 - 142,167,176
singlet/doubletsinglet
Overlap geneGbp5
Upstream geneUnc5c, Bmpr1b, Gabarapl2-ps3, Pdlim5
Downstream geneGbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278G24.T7 (MSMg01no278_g24.b1)MSMg01-278G24.TJ (MSMg01no278_g24.g1)
ACCAG416061AG416062
length706714
length of high quality
(start - end)
319 (37 - 355)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no278_g24.b1 PHD_FILE: MSMg01no278_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:46 2005CHROMAT_FILE: MSMg01no278_g24.g1 PHD_FILE: MSMg01no278_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTG
AAGCTGAAGCAAGGTAACAGAGCTTCCTTTTGGGAAAAAGAAAGAAAAGT
ACCCAGGATTATTTTGTTTTTAATAATGCAGCTAAGTATATCATTTTTCA
TATTTCCCCTCCAAGCACTTCTACAAAATAATAGTGATTATTTAATTGAG
AATGAACTAACAGGTTCAATATTAAATTCCATTAGTCTCAGTTATTGAAC
AAATTTCTCTCTTTTATTGTTTCCTTTGCTAGTTAGGTTTAAATCTTTAT
GCAGTATCAGGGGAAAGGACATTTATATAAAGCATATAGATTAAAGTGGA
TATTTTTTGTATTACCCCACCACCCTTGTATTTCCTTCTCTAGGTAGCGA
TGAAAGAACTCAAACATTCAATCTACCGCGGCTGTGCATACAGAAGTTCT
TCCCAGTAAAGAAATGCTTTGTTTTTGACGCTCCTGCTCTTGGAAGTAAG
CTTTCCCAGCTTCCAACACTCAGCAACGAGGAGCTGAACTCAGATTTTGT
GCAGGACCTTTCAGAATTCTGTTCACACATCTTCACCCAATCTAAGACCA
AGACTCTTCCAGGAGGCATCCAGGTCAACGGACCTCGTGAGTACTTTTTT
TTTGTTTGATTGATTTTTTTTTGTTTTTTTTTTCCATTTTTTATTAGGTA
TTTAAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGATCTGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGATTTTTGGACATAGTACTACCGGAGGATC
CAGCAATACTTCGCCTGACTTCTATACGNAACATGCCNTATAGGTAAGAA
GGAACATGCTCCACTATGTTCATAAAAAAACAATTTATAATAGCGGGAAG
CTGGAAAGAATCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCCAAACCTAGGATACCCAAGATAAAAGATACAATTTGCTA
AACACATGAAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_g24.b1 MSMg01no278_g24.b1 CHROMAT_FILE:
MSMg01no278_g24.b1 PHD_FILE: MSMg01no278_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:46 2005
         (319 letters)



>mm_chr3_142166660_142167378
          Length = 719

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgaagctgaagcaaggtaacagagcttccttttgggaaaaagaaagaaaagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgaagctgaagcaaggtaacagagcttccttttgggaaaaagaaagaaaagt 264

                                                                       
Query: 65  acccaggattattttgtttttaataatgcagctaagtatatcatttttcatatttcccct 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 acccaggattattttgtttttaataatgcagctaagtatatcattttccatatttcccct 324

                                                                       
Query: 125 ccaagcacttctacaaaataatagtgattatttaattgagaatgaactaacaggttcaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaagcacttctacaaaataatagtgattatttaattgagaatgaactaacaggttcaat 384

                                                                       
Query: 185 attaaattccattagtctcagttattgaacaaatttctctcttttattgtttcctttgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attaaattccattagtctcagttattgaacaaatttctctcttttattgtttcctttgct 444

                                                                       
Query: 245 agttaggtttaaatctttatgcagtatcaggggaaaggacatttatataaagcatataga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agttaggtttaaatctttatgcagtatcaggggaaaggacatttatataaagcatataga 504

                        
Query: 305 ttaaagtggatat 317
           |||||||||||||
Sbjct: 505 ttaaagtggatat 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)