BAC Information

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BAC

Clone NameMSMg01-279C13
Chromosome3 (Build37)
Map Location 123,057,717 - 123,058,395
singlet/doubletsinglet
Overlap geneSec24d
Upstream geneLOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2
Downstream geneG430022H21Rik, Prss12, EG668804, Ndst3, LOC100043333, EG668809, Tram1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279C13.T7 (MSMg01no279_c13.b1)MSMg01-279C13.TJ (MSMg01no279_c13.g1)
ACCAG416595AG416596
length7491,605
length of high quality
(start - end)		679 (71 - 749)---
definitionCHROMAT_FILE: MSMg01no279_c13.b1 PHD_FILE: MSMg01no279_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:41 2005CHROMAT_FILE: MSMg01no279_c13.g1 PHD_FILE: MSMg01no279_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATACTTTGAAAAGACAGAGCAGTTTGTTATCTCCCCAAGTCCTGA
CTTCTGCAGGCTGGAATGCTCTCTTCCATACCTTAAGTATAGGCTTTCAG
AAGGGCAAAGAAATCACCCATCCTGCTTCTTAGTCATCAGGGCCCAGATA
ATCAACAGTGGCATAAGTCAGCAGTGCTAGAGAACACACTCACACTCTTA
CATTACACCTCAGACACCTCACTAGCAAGAAAACTTAGGCCAAATCTGTG
TGGCCTGACCCCAGAGAGTCTGGTCTCCCTCATTATGGCTAGAGGAGATG
GCCATTCTCCTTCCTTCTATTTCACTGGTTCTTGTAGTATTTTCCAGCTT
CTAACTAGCTACCCAATGAGTCTCAGCTGACTCACCGAGCTATGAGATTA
GCAAGACGCTACCTGACTTGGCAAAGAAGTTGATAAGGGCATCAGTTTCA
CAGCTCTTGTACAGATCCGCTAGCTGGGTGCTGCAGTTTAAGGCGAGATT
GTGAATCCGGAGTCTTCGCTGACCACTGATGGTCGTGTAGAGCACAGCAC
ACTGCAGAAACAACATGGAGACCTGGGTATTACTGACCAGACCCAGCCAA
GCTAATTTAATCCCGCTGGAGTGTATAGAATCATACGTACAGATCAATGA
TTTCTAAAAATTCCCAGTGTCTCTCTGTTACTTTTCAAGACTGAATGAT

TTTCTTTTCTTTTCTCTTCTCANTATCCTTTTATATTCAGATATATAAAC
TGGATTACTATTATGNTGGGCGGGGCTCAATATCGTGTATGGGTNTGTGG
GCCTATGGTGGTTGCCAGCCACGCGGCCGGCTTATAGCGAGTTAGGAGAT
GTACACCATAGTAAGAAGAGGGATCCTCTGCGTGGAGAGTTTCGCATGTG
ACACGGTACACTTAACCACAATACGCTCTCTTACTAGGAGCGAGCTATGA
TTCACTTGTGTTCTTCTACACACAGAGATCTTATATACTGATCACTCGCC
ATGCCACTAGATCTCTTCCATTATACTGTACAGGCCTAGGAGAGTTAGAG
GAGGAGTAATAAGAGTGACCAACAAATGTCTGAGTCTAACTTCTTGCTCT
CCATTGTATTATATATTCGACCACGTTCTGTTATTTGTGACTGATACTGT
TGTTTGTCATACCAGTAGCCAGCTAGTACATTGCAGTCCTTCTAATAGGC
TAGACGACGGCGTGTAGGTATTGTTCCTCGACTAGTATGTGCGATGTATG
TATGCGTGCGTGCTGCGATCGAGGGGAGCGGNCGAGCTTTGTCGTGCTGA
TAATAGTGTCGCGCCTGTTGCGATATGTGTGTCATAGTGGTAGATGTGTG
ATGCAGTACAGTATGACTGTAGTGGCGCCAATGGTGTTGCGACGCACTGA
TCTCACTACAGTATCAGTGTGTTCTGCGTCGCGATTAGTACAGTCGTCTT
ATTCGCGTGTGATACTGACTGTTGTTACTGAGTATGTGAGAGTCACACGT
ATACCAATCATCGTGTGACTTCTATACGATAGTTGATACGATGTTCTACG
CACCCGCGCACATANACGTAGCGGTCTATGTATTTGATCATGTTCTTGTG
CTCTCCGCGCACACATGTGTGTTATTTTCGCTGCGCCGCGACGTCGTACC
GCGTGTGTGAAAGTGCCGCCGCCGTTACGCTGCCGTATATAATATGTGCG
TCATCTGCGACAATACATTTTNTANAGCGATGCCGCGCAGCCACACTATT
ATGTCGTCTGTCACGCGCATCCCGACGCCGTGCTGNTTGTCTGCATGCTG
TCAACGCCGTGTGTACACAGCTACGTGACTGNTGTGANTCTGATGCGTAT
ACGACTGATATATATATAGTAGCGTCGGCTGNAGATGATCATTTCCTCCG
ATCACGCGCCATTACTACGTGTAACTAANATCTGTCTGCTGTGCTCTTCT
ATTATTATACGTCTGTTGAGAAGANGACCGCAAGAGAGAGACAAACTGTA
TTAGGCACATATATATCTCTCAGATGTATGTCTCGACGCATATATGTACT
ACAGTACTCCACTGCCTCATTGTCTGCGACACAGAGAGTGTATTGAGATA
TAATGATGTCTCACGACGCATTTATATCCGGCATGGCTGTAAGCGTCGAG
TCGGATTCTGCGAGACCGTGTAGAATCTAGTTCTAGTTCATGTATGGAGT
TTATACTGTGATGAGTACGAATTATGATATGCACGGCGGCGCTGTCAATG
ACTCTTGCCACGCGCTCTGTATATAATCGGGTGTGCTATGGTTCTCTGCA
CGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_c13.b1 MSMg01no279_c13.b1 CHROMAT_FILE:
MSMg01no279_c13.b1 PHD_FILE: MSMg01no279_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:41 2005
         (679 letters)



>mm_chr3_123057517_123058595
          Length = 1079

 Score = 1282 bits (663), Expect = 0.0
 Identities = 675/679 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagcagtttgttatctccccaagtcctgacttctgcaggctggaatgctctcttccata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 agagcagtttgttatctccccaagtcctgacttctgcaggctggaatgctctcttccata 820

                                                                       
Query: 61  ccttaagtataggctttcagaagggcaaagaaatcacccatcctgcttcttagtcatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 ccttaagtataggctttcagaagggcaaagaaatcacccatcctgcttcttagtcatcag 760

                                                                       
Query: 121 ggcccagataatcaacagtggcataagtcagcagtgctagagaacacactcacactctta 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 759 ggcccagataatcaacagtggcgtaagtcagcagtgctagagaacacactcacactctta 700

                                                                       
Query: 181 cattacacctcagacacctcactagcaagaaaacttaggccaaatctgtgtggcctgacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 cattacacctcagacacctcactagcaagaaaacttaggccaaatctgtgtggcctgacc 640

                                                                       
Query: 241 ccagagagtctggtctccctcattatggctagaggagatggccattctccttccttctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 639 ccagagagtctggtctccctcattatggctagaggagatggccattctccaaccttctat 580

                                                                       
Query: 301 ttcactggttcttgtagtattttccagcttctaactagctacccaatgagtctcagctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttcactggttcttgtagtattttccagcttctaactagctacccaatgagtctcagctga 520

                                                                       
Query: 361 ctcaccgagctatgagattagcaagacgctacctgacttggcaaagaagttgataagggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctcaccgagctatgagattagcaagacgctacctgacttggcaaagaagttgataagggc 460

                                                                       
Query: 421 atcagtttcacagctcttgtacagatccgctagctgggtgctgcagtttaaggcgagatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 atcagtttcacagctcttgtacagatccgctagctgggtgctgcagtttaaggcgagatt 400

                                                                       
Query: 481 gtgaatccggagtcttcgctgaccactgatggtcgtgtagagcacagcacactgcagaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gtgaatccggagtcttcgctgaccactgatggtcgtgtagagcacagcacactgcagaaa 340

                                                                       
Query: 541 caacatggagacctgggtattactgaccagacccagccaagctaatttaatcccgctgga 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 339 caacatggagacctgggtattactgaccagacccagccaagctaatttaatcccgctgaa 280

                                                                       
Query: 601 gtgtatagaatcatacgtacagatcaatgatttctaaaaattcccagtgtctctctgtta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gtgtatagaatcatacgtacagatcaatgatttctaaaaattcccagtgtctctctgtta 220

                              
Query: 661 cttttcaagactgaatgat 679
           |||||||||||||||||||
Sbjct: 219 cttttcaagactgaatgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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