BAC Information

Click to search

BAC

Clone NameMSMg01-279E08
Chromosome3 (Build37)
Map Location 76,868,171 - 76,868,856
singlet/doubletsinglet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279E08.T7 (MSMg01no279_e08.b1)MSMg01-279E08.TJ (MSMg01no279_e08.g1)
ACCAG416677AG416678
length762761
length of high quality
(start - end)
717 (46 - 762)685 (77 - 761)
definitionCHROMAT_FILE: MSMg01no279_e08.b1 PHD_FILE: MSMg01no279_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:49 2005CHROMAT_FILE: MSMg01no279_e08.g1 PHD_FILE: MSMg01no279_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGCCAAGTGGAAACAGAAAGAACTATTCAAAGAATCAACCAAACC
AGGATTTGGTTCTTTGAGAAAAATCAACAAAATAGATAAACCCTTAGCCA
GACTAACTAGAGGGCACAGGGACAGTATTCTAATTAAGAAAATCAGAAAT
GAAAATGGAGACATGACAACAGAAACTGACAAAATCCAAAAAATCATCAG
AGCCTACTACAAAAGCCTATACTCAACAAAACTGGAAATCCTGGATCAAA
TGTACAATTTTCTAGACAGATACCAGGTACCAAAGTTAAATCAAGATCAT
ATTAATGATCTAAACAGGCCCATATCCCCTAAAGAAATAGAAACTGTCAT
TAATAGTCTCCCAACCAAAAAAAAAAAAAATTTCCCAGGACCAGATGGGT
TTAGTGCAGAGTTCTATCAAAATGTCCAAGAAGACCTAAAACCAGTACTC
CTCAAACTATTCTACAAAATAGAAACAGAAGGTATTCTACCCAAATAGTT
CTATGAAGCCACAATTACTCTGATACCTAAACTACAAAAAGAACCAACAA
AGAAAGAGAAATTCAGGCCAATATCCCTTATGAATATTGATGCAAAATAC
TCAATGAAATTCTCTCAAACCGAATCCAAGAACACAGTGAAAGCATCATC
CATCATGATCAAGTAGTCTTCTTTCCAGGGATACAGGTATGGTTCAGTAT
AAGGGAATCCAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGTATGAGTTTTAGAATTTGAGT
CTGAGAAAATATGCAAGAGTAAGGATATCAACAACAAAATTATTTTTTTT
ACATCAATAAGAGTTTTGAGAGATAATAGGTGATATTTTACAAGACAGAC
ATTTATTAATAATATACTGATAGATAATTTCAGCTAATAGATTATATTTC
AAGCAAGATTTAAATTGTGGTCTGGAGCTGCTAATACTCTTGTCTCCTTT
CAAGTTTTGAGAATATCTGCAGGCTACTCTGCACCTGGTATATGCAGTGC
TGTGGACTGAACTCATGACTTACTAGGATAAATAAGCACATTTTAGACTG
AGTCACATCCCCAAACCTGTTCTAAAATGTTAAAAGAACATTTATCTAAT
AGATAAGCAAACATGCTGAGTTAATTTGGAACCTATCCCAATTTCACACA
TGACATTCTTATAACATTGAAAGCATCTGGGTGGTTTGATAAACTAAGTT
TCTGTATCTTTTAGCAAGTGGGCATGTTTATGAGACTATGAAGGCAAATG
TATATAAATGAGGTCAAAGGTCAATCCCAAGTATTTCCCCCCACCCCTCA
GGAGCTCTCTACCTTCATTTATTAGATATCATCCTTATTTACATTTCAAA
TGTTATCCCCTTTCCTGGTTTCCCTTATGAAATTCCCCTCCCCCTGCTCA
CCAACCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_e08.g1 MSMg01no279_e08.g1 CHROMAT_FILE:
MSMg01no279_e08.g1 PHD_FILE: MSMg01no279_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:49 2005
         (685 letters)



>mm_chr3_76867971_76869056
          Length = 1086

 Score = 1270 bits (657), Expect = 0.0
 Identities = 679/687 (98%), Gaps = 3/687 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtatgagttttagaatttgagtctgagaaaatatgcaagagtaaggatatcaacaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtatgagttttagaatttgagtctgagaaaatatgcaagagtaaggatatcaacaaca 260

                                                                       
Query: 61  aaattattttttttacatcaataagagttttga--gagataataggtgatattttacaag 118
           ||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 261 aaattattttttt-acatcaataagagttttgacagagataataggtgatattttacaag 319

                                                                       
Query: 119 acagacatttattaataatatactgatagataatttcagctaatagattatatttcaagc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acagacatttattaataatatactgatagataatttcagctaatagattatatttcaagc 379

                                                                       
Query: 179 aagatttaaattgtggtctggagctgctaatactcttgtctcctttcaagttttgagaat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagatttaaattgtggtctggagctgctaatactcttgtctcctttcaagttttgagaat 439

                                                                       
Query: 239 atctgcaggctactctgcacctggtatatgcagtgctgtggactgaactcatgacttact 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atctgcaggctactctgcacctggtatatgcagtgctgtggactgaactcatgacttact 499

                                                                       
Query: 299 aggataaataagcacattttagactgagtcacatccccaaacctgttctaaaatgttaaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aggataaataagcacattttagactgagtcacatccccaaacctgttctaaaatgttaaa 559

                                                                       
Query: 359 agaacatttatctaatagataagcaaacatgctgagttaatttggaacctatcccaattt 418
           ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 560 agaacatttatctaatagataagcaaacatgatgagttaatttggaaccaatcccaattt 619

                                                                       
Query: 419 cacacatgacattcttataacattgaaagcatctgggtggtttgataaactaagtttctg 478
           ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 620 cacacatgatattcttataacattgaaagcatctgggtggtttgatgaactaagtttctg 679

                                                                       
Query: 479 tatcttttagcaagtgggcatgtttatgagactatgaaggcaaatgtatataaatgaggt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tatcttttagcaagtgggcatgtttatgagactatgaaggcaaatgtatataaatgaggt 739

                                                                       
Query: 539 caaaggtcaatcccaagtatttccccccacccctcaggagctctctaccttcatttatta 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 caaaggtcaatcccaagtatttccccccacccctcaggagctctctaccttcatttatta 799

                                                                       
Query: 599 gatatcatccttatttacatttcaaatgttatcccctttcctggtttcccttatgaaatt 658
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 800 gatatcatccttatttacatttcaaatgttatcccttttcctggtttcccttatgaaatt 859

                                      
Query: 659 cccctccccctgctcaccaaccctccc 685
           |||||||||||||||||||||||||||
Sbjct: 860 cccctccccctgctcaccaaccctccc 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1086
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1076
Effective search space:   726300
Effective search space used:   726300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)