BAC Information

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BAC

Clone NameMSMg01-279J05
Chromosome3 (Build37)
Map Location 4,221,062 - 4,221,541
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667655, LOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
Downstream geneLOC620283, Zfhx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279J05.T7 (MSMg01no279_j05.b1)MSMg01-279J05.TJ (MSMg01no279_j05.g1)
ACCAG416901AG416902
length748861
length of high quality
(start - end)		478 (22 - 499)---
definitionCHROMAT_FILE: MSMg01no279_j05.b1 PHD_FILE: MSMg01no279_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:12 2005CHROMAT_FILE: MSMg01no279_j05.g1 PHD_FILE: MSMg01no279_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACTCACTATAGTCCAGAGGATCCGCGGAATTCTTTAACTGATAACAATT
GTTAACAAAATCTGCCCCCCCTCTCTCACTCTTTGTATATATCAGTCTAT
TTCTGCTTATTATTAATCCACTCTCCACCAATCTATCATCATCTAAGTAT
TACCTATATGTCTCTATATCATCTATTTGTCTGTTTCCCTACCTACCTAC
CTACCATCTAATATCTGATTAGGATATTAGAGTTTATCCTTTCCTGAATG
AAGGAAACTCTCCAATGGGTAGACAGTAAAATATGCCTGAAATTTTAACA
TAATATATGAGAGTAGAAATCTTCTTTATGAAAGGCATATATCCTGTCTC
ATAAATGGAAAATATAAATAAATTTGACTAAGTAGCACAAAACTATACAA
CCTCAAGGACATAAAACTGCCTTCAGATTATTCATTTTTAGAGTTGAAAA
TATATAGTAGTGATGATAGGGAATGTAATTCTAATGCACTGAATAGAAGT
CCCAAAGATAAGACATCATATAAAATTATATTAAACATAAATGTGTATAT
ATGAAGATATGCTGATAGGCATACTTAAAAGGATGCAAACAGTTTCTTCA
CAGTGTTGCTCAAGCACAGCAGTTTGAAAGTGTACAGTCGGGGAGAGACA
TAGTATTGGAGTAAGCTCTATTACATATTTAGAAACACACACTCACAAAG
CATTTGTAGAAATTGGCTACTAATTCTAAAGAAGAAAGTTACCTGTAA

NTTTTATTTTCTTTCTTTTTTTTTTTCTTTTTTCCTCTTTTTTTTATTAA
AATTTTTTTTTTTTTNNNNNTTTAGTATGAXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGNAAGGTATCCGC
CGAGAATTTCTTTCAGTTGGTTTTTTTTTTTTTTCCCTTTTGGTGTTTTT
TATTTGGGTTTATAAAAAATAATTTTTTTTTTGTTTTTTTTGTTTTTTTT
TTTATTTTTTTTTATGTGGTTAAAAACAGGGTCCCCAAATTCCCCGGAGG
GTTGGTTTACCCTTGCCTTTTCCTTTCCCCTGGAATCCAACATTTGGAAA
CTTTGGTGGGTTTTGGCCATTTTTTGGGGGGGGGGGGGTCTCTTAAAAAA
AAATATGGTGGTTAAAATTTTTTTTTTAATACCTTTTTTTTTTTTTCTTT
GGGGGTGCTCTATTGGGAGAAATTTTTTCTTTTTTTTTTAAATATTGGTG
TTGTGAAAATTTTTTTATTTTTTTTTTATATAAATAATATAAATTTAATA
AATAAAAAGTCCCTCCCTTCTTTAATAATAAAATAATTATATTATATTTT
TTTTGTTTTGTTGGTATGTTTTCTTTTTTTTCTTAATATTATTTTATTTA
ATTTTATTTTTTTATTTTGTTATCCTTATTTTATCCATTTTTGTTGTTTT
TTTTTNTTAGGTTGGGGTGGAGNTGAGTTGGTGTTTATTATAGTATTATA
GTAATTTTTATTTCTTGTCTTTATTTTTTTTTGTTTTATTATATTTTATC
TTTATTTTTTATATTTTTGTGTTTCAGTATTTTTCATTTAATTAATACTA
AGACTATAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_j05.b1 MSMg01no279_j05.b1 CHROMAT_FILE:
MSMg01no279_j05.b1 PHD_FILE: MSMg01no279_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:12 2005
         (478 letters)



>mm_chr3_4220864_4221741
          Length = 878

 Score =  862 bits (446), Expect = 0.0
 Identities = 468/480 (97%), Gaps = 8/480 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctttaactgataacaattgttaacaaaatctgccccccctctctcactctttgta 66
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattctttaactgataagaattgttaacaaaatctgccccccctctctcactctttgta 258

                                                                       
Query: 67  tatatcagtctatttctgcttattattaatccactctccaccaatctatcatcatctaag 126
           |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 259 tatatcagtctatttctgtttattattaatccactctccaccaatctatcatcgtctaag 318

                                                                       
Query: 127 tattacctatatgtctctatatcatctatttgtctgtttccctacctacctacctacc-- 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 319 tattacctatatgtctctatatcatctatttgtctgtttccctacctacctacctaccta 378

                                                                       
Query: 185 ------atctaatatctgattaggatattagagtttatcctttcctgaatgaaggaaact 238
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctaccatctaatatctgattaggatattagagtttatcctttcctgaatgaaggaaact 438

                                                                       
Query: 239 ctccaatgggtagacagtaaaatatgcctgaaattttaacataatatatgagagtagaaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctccaatgggtagacagtaaaatatgcctgaaattttaacataatatatgagagtagaaa 498

                                                                       
Query: 299 tcttctttatgaaaggcatatatcctgtctcataaatggaaaatataaataaatttgact 358
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 499 tcttctttatgaaaggcatatatcctgtcacataaatggaaaatataaataaatttgact 558

                                                                       
Query: 359 aagtagcacaaaactatacaacctcaaggacataaaactgccttcagattattcattttt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aagtagcacaaaactatacaacctcaaggacataaaactgccttcagattattcattttt 618

                                                                       
Query: 419 agagttgaaaatatatagtagtgatgatagggaatgtaattctaatgcactgaatagaag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agagttgaaaatatatagtagtgatgatagggaatgtaattctaatgcactgaatagaag 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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