Query= MSMg01no279_k01.b1 MSMg01no279_k01.b1 CHROMAT_FILE:
MSMg01no279_k01.b1 PHD_FILE: MSMg01no279_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:16 2005
(612 letters)
>mm_chr3_27375200_27376211
Length = 1012
Score = 1129 bits (584), Expect = 0.0
Identities = 602/608 (99%)
Strand = Plus / Minus
Query: 5 gaattccatgtccaccgtcgctccctgtgccctaggcttctcttgtctgccttgagtctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 gaattccatgtccaccgtcgctccctgtgccctaggcttctcttgtctgccttgagtctt 753
Query: 65 gataaaccacagtgtttagaccctctgcccccaggctgttagatactagagctcggactt 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 752 gataaaccacagtgtttagaccctgtgcccccaggctgttagatactagagctcggactt 693
Query: 125 ttccacacaaaaggctttttctactcttgcttttctgttgtgtgttcaggtgagaaggaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttccacacaaaaggctttttctactcttgcttttctgttgtgtgttcaggtgagaaggaa 633
Query: 185 gagcaagaagtatcagagagcccaagaggcagggaagggcaccccatgctgacacatgag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gagcaagaagtatcagagagcccaagaggcagggaagggcaccccatgctgacacatgag 573
Query: 245 agaccgggagggagggagggcaggctacagtaagaaggcaggacccagatgtgatcctca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 agaccgggagggagggagggcaggctacagtaagaaggcaggacccagatgtgatcctca 513
Query: 305 gcacagctcagcaagctggagggccggaactgtgcgtgggcgccatacctgggtgcctgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gcacagctcagcaagctggagggccggaactgtgcgtgggcgccatacctgggtgcctgg 453
Query: 365 atgccctgctcgggcttcttcgcagtccccaggaggacagccctgatctcctctctgcct 424
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 452 atgccctgctcgggcttcttctcagtccccaggaggacagccctgatctcctctctgcct 393
Query: 425 tggtctgccgcccctgagaagcaagactgccctgcacccctcaggttgctcaccacagct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tggtctgccgcccctgagaagcaagactgccctgcacccctcaggttgctcaccacagct 333
Query: 485 caaccaagaggggagggtggctgttggttagtttgtctgtgttgctgtttttaatttgga 544
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 332 caaccaagaggggagggtggctgttggttagtttgtctgtgttgttgtttttaatttgga 273
Query: 545 ggaaggataaattacttttctaaaggcataaacttttataataaccaactttaactctca 604
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 272 ggaagaataaattacttttctaaaggtataaacttttataataaccaactttaactttca 213
Query: 605 gctataga 612
||||||||
Sbjct: 212 gctataga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no279_k01.g1 MSMg01no279_k01.g1 CHROMAT_FILE:
MSMg01no279_k01.g1 PHD_FILE: MSMg01no279_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:16 2005
(387 letters)
>mm_chr3_27192385_27193171
Length = 787
Score = 708 bits (366), Expect = 0.0
Identities = 382/392 (97%), Gaps = 8/392 (2%)
Strand = Plus / Plus
Query: 1 aaccctggctcagcctttgctgtcctgccccaaaccctggtcagtcagcctgtgcaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccctggctcagcctttgctgtcctgccccaaaccctggtcagtcagcctgtgcaagct 260
Query: 61 acaagccccggccccacccccgatcctcccagggaggagctccccttcaaatccttttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaagccccggccccacccccgatcctcccagggaggagctccccttcaaatccttttcc 320
Query: 121 tccactgagcatgttttggcagtctaggaagcacgagggatgctcttccctacaggccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccactgagcatgttttggcagtctaggaagcacgagggatgctcttccctacaggccct 380
Query: 181 gctcctcacttgactgctcagctacagagccaatcccggggtggacagtacagtgtttgc 240
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 gctcctcactagactgctcagctacagagccaatcccggggtagacagtacagtgtttgc 440
Query: 241 cttcagtcaccagcatttagctgcaaaggaggaaggtcaatgatgctttgtgaaggtcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcagtcaccagcatttagctgcaaaggaggaaggtcaatgatgctttgtgaaggtcaa 500
Query: 301 agccgtttgtgaatggctccagtggaagcaaagtgtgtgtgtgtgtgtgtgtgtgtgtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agccgtttgtgaatggctccagtggaagcaaagtgtgtgtgtgtgtgtgtgtgtgtgtgt 560
Query: 361 gtgtgtgt--------atgtgttaatgatcac 384
|||||||| ||||||||||||||||
Sbjct: 561 gtgtgtgtgtgtgtgtatgtgttaatgatcac 592
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
