Query= MSMg01no279_n01.b1 MSMg01no279_n01.b1 CHROMAT_FILE:
MSMg01no279_n01.b1 PHD_FILE: MSMg01no279_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:31 2005
(570 letters)
>mm_chr3_32902471_32903440
Length = 970
Score = 1009 bits (522), Expect = 0.0
Identities = 546/554 (98%)
Strand = Plus / Minus
Query: 5 gaattcactgtgtgctccccacattttccctgtactgccattgactgtcccatttatttg 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gaattcactgtgtgcttagcacattttccctgtactgccattgactgtcccatttatttg 495
Query: 65 gcaatacaaaaatctgctctagtccagtattagctctgcttatgtaaaagaacataaaga 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gcaatacaaaaatctgttctagtccagtattagctctgcttatgtaaaagaacataaaga 435
Query: 125 agaggaaacagcatgctgagtgttcattcacatctttgccccgaggagtaagagaatata 184
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 434 agaggaaacagcatgctgagtgttcattcacatctttgccctgaggagtaagagaatata 375
Query: 185 cccaggaatctgccacattaaaataaattgtatgccaaagattatgttattccagcacta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cccaggaatctgccacattaaaataaattgtatgccaaagattatgttattccagcacta 315
Query: 245 acagtaacggcagccacaatgagagctaccacccagagtgaccaggagggagagccatag 304
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acagtaacagcagccacaatgagagctaccacccagagtgaccaggagggagagccatag 255
Query: 305 agacttattgggtgcttttcctgtcttatacctaaatactcagtaatcctgtgtattgtt 364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 254 agacttattgggtgcttttcctgtcttatacctaaatactcagtaatcctatgtattgtt 195
Query: 365 gaaatttctaatcccaatccagtgtttctaccccacctttgacctaaatttagtttccag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gaaatttctaatcccaatccagtgtttctaccccacctttgacctaaatttagtttccag 135
Query: 425 ataaaagacactcaatttttattatttacaataagtcccaaacaacacaagagctgggaa 484
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 134 ataaaagacactcaatttttattatttacaataagtcccaaacaatacaagagctgggaa 75
Query: 485 gatatctaacctctatgctgttagaatctacttttcatttgataaccctaagttattact 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 gatatctaacctctatgctgttagaatctacttttcatttgataaccctaagttattact 15
Query: 545 tactatgtttcatc 558
||||||||||||||
Sbjct: 14 tactatgtttcatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no279_n01.g1 MSMg01no279_n01.g1 CHROMAT_FILE:
MSMg01no279_n01.g1 PHD_FILE: MSMg01no279_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:31 2005
(504 letters)
>mm_chr3_32740998_32741901
Length = 904
Score = 843 bits (436), Expect = 0.0
Identities = 486/504 (96%), Gaps = 6/504 (1%)
Strand = Plus / Plus
Query: 1 tttgtttagctctgagccccattttttaatggggttataatgcattttctacagacaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgagccccattttttaatggggttataatgcattttctacagacaccc 260
Query: 61 ttgtacaaagatttctgtaagaaacttaccctcatgttcccactgacttgtgggtgccaa 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ttgtacaaagatttctgtaagaaacttaccttcatgttcccactgacttgtgggtgccaa 320
Query: 121 cattcagttttgtcaggagaaggctaattctccccagtgtgttagtgccagtgtgtcttc 180
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 cattcagttttgtcaggagaaggctaattctcatcagtgtgttagtgccagtgtgtcttc 380
Query: 181 ctgtcgaagtggtgaggaatgtctgtttgtccacaccctcaccgttctttggccagattt 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtcgaagtggtgaggaatggctgtttgtccacaccctcaccgttctttggccagattt 440
Query: 241 tcagtgtttgctagtctaatggttgagaagtgacataaaaacatttggcacttcattctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagtgtttgctagtctaatggttgagaagtgacataaaaacatttggcacttcattctg 500
Query: 301 tgatgactgaatattttcttatgtatttatagtcatttagaaagttatgatcatcattga 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatgattgaatattttcttatgtatttatagtcatttagaaagttatgatcatcattga 560
Query: 361 gtgtcattttagttatttctgtagttaactgttctattgctgtggcgagagcttaacttt 420
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
Sbjct: 561 gtgtcattttagttatttctgtagttaactgttctattgctgtggtgagaccttaactct 620
Query: 421 aatccacaggcataaagcaaagagagagagagagagagagagagagagagagagagagag 480
||| |||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgcacaggcagagag---agagagagagagagagagagagagagagagagagagagag 677
Query: 481 agagcagagtgag-gagg-gagag 502
|||| |||| ||| |||| |||||
Sbjct: 678 agag-agagagagagaggagagag 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 130
Number of extensions: 65
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
