Query= MSMg01no280_a19.b1 MSMg01no280_a19.b1 CHROMAT_FILE:
MSMg01no280_a19.b1 PHD_FILE: MSMg01no280_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:48 2005
(692 letters)
>mm_chr3_65393186_65394277
Length = 1092
Score = 1187 bits (614), Expect = 0.0
Identities = 647/664 (97%), Gaps = 11/664 (1%)
Strand = Plus / Plus
Query: 5 gaattccaataaatgttctggtgaggagcttgaggactcgacttacaagactaatttgaa 64
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccaacaaatgttttggtgaggagcttgaggactcgacttacaagactaatttgaa 265
Query: 65 gtggcagagaatttcaagtacaactagtttgttaaatatgtaaaaaaaaaaaaaaagtag 124
||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 266 gtgacagagaattttaagtacaactagtttgttaaatatgtaaaaaaaaaaaaaa-gtag 324
Query: 125 gcaatatctaataccaagtgggtcatttcagcagagagataagaaactttaagaatcacg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaatatctaataccaagtgggtcatttcagcagagagataagaaactttaagaatcacg 384
Query: 185 tagaagggctggagagatggctcagaggttaagaggactgactgctcttccagaggaccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagaagggctggagagatggctcagaggttaagaggactgactgctcttccagaggaccc 444
Query: 245 aggttcaattcccagcacccacatggcagcacacaactctctgtaactccagatatccac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggttcaattcccagcacccacatggcagcacacaactctctgtaactccagatatccac 504
Query: 305 atgtgtagacaaaacaccaacgcacataaaacaaaaataaaataaaatattaatagctct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtgtagacaaaacaccaacgcacataaaacaaaaataaaataaaatattaatagctct 564
Query: 365 cttcaaaattaaaacatattaactaaaatgaatctttgtatactctcacggtcgtggaac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttcaaaattaaaacatattaactaaaatgaatctttgtatactctcacggtcgtggaac 624
Query: 425 caatcagtgaattgtagatcattagtgattcctgaggttgaaacaccaagagtgaaggaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caatcagtgaattgtagatcattagtgattcctgaggttgaaacaccaagagtgaaggaa 684
Query: 485 aggcgtagcatttgaatgccacaagaaatcacaatgagattgtcaaaacttaatggtaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aggcgtagcatttgaatgccacaagaaatcacaatgagattgtcaaaacttaatggtaga 744
Query: 545 ttccaaaccgtgaacctcagaagctgggagaataccaagtaggttggatctctctctctc 604
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttccaaaccatgaacctcagaagctgggagaataccaagtaggttggatctctctctctc 804
Query: 605 tctccctctctctctctctctctctctctctctctctctctcacacacacacacacacac 664
|||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 805 tctcgctctctctctctctctctctctctctc----------acacacacacacacacac 854
Query: 665 acac 668
||||
Sbjct: 855 acac 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 93
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_a19.g1 MSMg01no280_a19.g1 CHROMAT_FILE:
MSMg01no280_a19.g1 PHD_FILE: MSMg01no280_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:48 2005
(681 letters)
>mm_chr3_65576627_65577707
Length = 1081
Score = 1172 bits (606), Expect = 0.0
Identities = 657/674 (97%), Gaps = 4/674 (0%)
Strand = Plus / Minus
Query: 1 tttcatttgaacatcaagagaaatcagccacatagctaaggtaaccttctccacttgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 672 tttcatttgaacatcaagagaaatcagccacatagctaaggtaaccttctctacttgatc 613
Query: 61 ccagcctagaggtcaagaaacaactcct-aggttcgttcctgggggacagaaacacttta 119
|||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||
Sbjct: 612 ccagcctagaggtcaagaaacaactcctca-gttctttcctgggggacagaaacacttta 554
Query: 120 ctgagttaaaagagtaacaggtccatcaataatcatttcaggctacaacagagccacaag 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 553 ctgagttaaaagagtaacaggtccatcaataatcatttcgggctacaacagagccacaag 494
Query: 180 aagccacagcagatcatcacctacgactaaagcattgcccaaagatgacactcttgggtc 239
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 493 aagccacagcagatcatcacctacgactaaagcattgcccgaagatgacactctggggtc 434
Query: 240 tttccaaaggcttagttttgtgacacatcaatggcaagcccttcttacagccgtttagtg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tttccaaaggcttagttttgtgacacatcaatggcaagcccttcttacagccgtttagtg 374
Query: 300 ttgccccttacatgagcatctccttacagttgtccagctcctttgctgtcttctgaagtc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttgccccttacatgagcatctccttacagttgtccagctcctttgctgtcttctgaagtc 314
Query: 360 tcaacccaagtgcctctacttgacactgtaaatctgaaacgacacagcatggtcattagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tcaacccaagtgcctctacttgacactgtaaatctgaaacgacacagcatggtcattagt 254
Query: 420 atactgtgtgtagcaggagtttttagctacactgctttggaaagaatgagtagttaccat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atactgtgtgtagcaggagtttttagctacactgctttggaaagaatgagtagttaccat 194
Query: 480 gactaggggagaaggagagaaagctgcaggagagaaagccaaccagccatgtaagaattt 539
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 193 gactaggggagaaggagagaaagctgcaggaaagaaagccaagcagccatgtaagaattc 134
Query: 540 gggtaagtggctattgggcacttccccaattgggcataaggtagcaggggaaggtttca- 598
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 133 gggtaagtggccattgggcacttctccaattgggcataaggtagcaggggaaggttt-ag 75
Query: 599 gagtctcaggagtaccagaggggagcatgtgctagcaagggaaggtttaggggtacccag 658
||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 74 gagcctcaggagtaccagaggggagcatttgctagcaaggaaaggtttaggggtacccag 15
Query: 659 cctttgaactagtc 672
||||||||||||||
Sbjct: 14 cctttgaactagtc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
