BAC Information

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BAC

Clone NameMSMg01-280J08
Chromosome3 (Build37)
Map Location 120,762,616 - 120,921,865
singlet/doubletdoublet
Overlap gene2510027J23Rik, LOC435752, Tmem56
Upstream genenone
Downstream geneLOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280J08.T7 (MSMg01no280_j08.b1)MSMg01-280J08.TJ (MSMg01no280_j08.g1)
ACCAG417638AG417639
length764762
length of high quality
(start - end)
233 (133 - 365)231 (136 - 366)
definitionCHROMAT_FILE: MSMg01no280_j08.b1 PHD_FILE: MSMg01no280_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:27 2005CHROMAT_FILE: MSMg01no280_j08.g1 PHD_FILE: MSMg01no280_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,762,616 - 120,762,848)(120,921,637 - 120,921,865)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCTCCGCACTGCAATTGTTCCATTTTCTGTATTTCATAACCTGCA
ATTTTGAAGCCATGCTTGGTATTCACCCTTGAAAAATAGTCATATCAGAT
AAAAGCAGAGGGATGCTAAACTATTGGAAAATAAATCAAATTCTCAGCAA
GCAGTTATATCCATCATGTCGCAGCGAGCGCACGTATAGTTTAAGCTCTG
AGCGCACAGTCTATCCATTGTAATGATTTGGGGTCAGGATCCTGCCACAT
GCATTTAGCATTCACTAAGAAGTAAACCCAGGAGTGTAGCAGGGAAGAGC
GCGGCGCTTTAGCTTTTGGTCCATTACCCCGCCNTCCATGCATTTGTTTG
AGGGCAGACACTGTGTGTCTATAACAGCTCAGAGAAGAATATAACACATG
CATGTATCTTGAGCATTTCTAAGACGCTTGCATCCGACATTACCTTGCTT
GATCTTCAAGGGAACCTGGGAAGAAAAAAATAGGGGAAAGCATCCACGAG
TTACTACCCCAGAGACACCTTCAGAAACATATGTGCAAGGACATGGAAGA
AAATATCCAAAAATGCAACCCACACCCAAATCATTTCCAAACTGAGGCCA
TCCTGTGATAATGACCCATTCAGTGGTACCTGGCCTTGCACTCAGCATAA
TCTCATAGGACAGCAGCAAGCATTCTGTGCCTTTGAAGTTCTCCCTTTAT
ATAGGAACAGCATT
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCAAAATAACGGCGTCCATTTTCAGAGATTGTCTC
CATCGTGGTTGGCCAGTTTTTGTTACAGTGAAATAGAAAGGGTTTTCACT
TTATACTTCTAGTTGGCTTTTCTTCAGAGGTGAATGAGCTCTTGACTTCA
GAGGCCATGCTCCTATTCAAGGCAAGAGGCAGCTCAGGAAAAATGGGTCA
GCTGCTGCACCAGTCTTTGTGAATTTAACAGTCAATAAGGTCCTTGGCAG
GGACTGGGCCTGTAACTGAGCGATCTGTGTAGAAACTGACCTAACTGGAG
GTTAAAGGTGAGGATTTTTTGGTTATCCTCCCGCCCCCATATTGTCTGCT
ATGCTGGAAGTGTTTGTAAGTAATCGTTGATAAAAAAAAAGAGAGTTAAC
TCCCTGAACATAAAGGTCTTGAGACACTGCTCAGTTTGCTGTGTGCTGGA
ATCACCTACAAGCCTGTGAAAGTCTAGATTACTGATCTGCAGCCCCAGAG
TTGCAGAGTCAGTATGTTTGGGATGAAGCTGAAGAATAATGCATGTCTAG
GCGTACAGAGCCAGCTCAGTGCAAAGGGCTTGGTGGGTAAGTGTTAGAAA
CAGGAACTGGGTCAAAGCCTGACTTGCTAGTGTGCATGTGTTCCCCCAGT
GTTGGAAGGAAGGAGAGAACCCAATCTCAGAGGGCTACTCGAAGTTTACT
GAAAAAACCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_j08.b1 MSMg01no280_j08.b1 CHROMAT_FILE:
MSMg01no280_j08.b1 PHD_FILE: MSMg01no280_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:27 2005
         (233 letters)



>mm_chr3_120762416_120763048
          Length = 633

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatagtcatatcagataaaagcagagggatgctaaactattggaaaataaatcaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatagtcatatcagataaaagcagagggatgctaaactattggaaaataaatcaaatt 260

                                                                       
Query: 61  ctcagcaagcagttatatccatcatgtcgcagcgagcgcacgtatagtttaagctctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagcaagcagttatatccatcatgtcgcagcgagcgcacgtatagtttaagctctgag 320

                                                                       
Query: 121 cgcacagtctatccattgtaatgatttggggtcaggatcctgccacatgcatttagcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgcacagtctatccattgtaatgatttggggtcaggatcctgccacatgcatttagcatt 380

                                                                
Query: 181 cactaagaagtaaacccaggagtgtagcagggaagagcgcggcgctttagctt 233
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 cactaagaagtaaacccaggagtgtagcaggaaagagcgcggcgctttagctt 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no280_j08.g1 MSMg01no280_j08.g1 CHROMAT_FILE:
MSMg01no280_j08.g1 PHD_FILE: MSMg01no280_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:27 2005
         (231 letters)



>mm_chr3_120921437_120922067
          Length = 631

 Score =  435 bits (225), Expect = e-126
 Identities = 228/229 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaagggttttcactttatacttctagttggcttttcttcagaggtgaatgagctcttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaaagggttttcactttatacttctagttggcttttcttcagaggtgaatgagctcttga 370

                                                                       
Query: 61  cttcagaggccatgctcctattcaaggcaagaggcagctcaggaaaaatgggtcagctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cttcagaggccatgctcctattcaaggcaagaggcagctcaggaaaaatgggtcagctgc 310

                                                                       
Query: 121 tgcaccagtctttgtgaatttaacagtcaataaggtccttggcagggactgggcctgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgcaccagtctttgtgaatttaacagtcaataaggtccttggcagggactgggcctgtaa 250

                                                            
Query: 181 ctgagcgatctgtgtagaaactgacctaactggaggttaaaggtgagga 229
           |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 249 ctgagcgatctgtggagaaactgacctaactggaggttaaaggtgagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)