BAC Information

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BAC

Clone NameMSMg01-280M02
Chromosome3 (Build37)
Map Location 27,315,973 - 27,463,212
singlet/doubletdoublet
Overlap geneFndc3b
Upstream geneSpata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr
Downstream geneE030011K20Rik, Pld1, Tnik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280M02.T7 (MSMg01no280_m02.b1)MSMg01-280M02.TJ (MSMg01no280_m02.g1)
ACCAG417767AG417768
length734731
length of high quality
(start - end)
293 (72 - 364)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no280_m02.b1 PHD_FILE: MSMg01no280_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:40 2005CHROMAT_FILE: MSMg01no280_m02.g1 PHD_FILE: MSMg01no280_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,315,973 - 27,316,261)(27,462,924 - 27,463,212)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTACAGTTCCAGAGCTGAAGTGTTTTGTTTTTTTTTTAAAAAAA
AAAAGACTCTTCCTGTGATTGAACACCCTTAAAAACCATTCCACTGCATC
TGCCTTCACCCGCCTGTGACTGCCGCAGGGAATGCAGAAGTGACGTCACA
GTGGGCCAAAAGACACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGA
GCTTTGGCAAAAATAGATTTACCTTGATACCATCAGTGTACACGTCTAAT
TACACTAATCACCATAGTCGATAACAAAATACAGAACTCTCTAGTGCATA
ACTCTATCAATATATGTACGCGACAATGCATTGATCTTAGCACTCTTCCA
GGAGATGAATATGGTTTCTGGGTACATGTAAACCTTTCAATCACTGATAA
TGGATTTTTTTTTTTTTTGGCATTTAATGAGTTAGATGCTCTTATCTTTA
AAAACACAAGAAAGATGTCAGAAGGCTAATACTACAGATGTTGCCAAGGA
ACCAAACTGACCCAAAATTACCAAAAGTATAACACACTCAAAATATAACA
TGCTAGGAGGGCACATTAGTAATACGCACATTTAACATTACCACAAATAA
AGATCGCACTGTCCCTGGCATTTAAAGTACTGTACGCTCAACAGAGTATA
ACTATACCCAAAACCAAATAATGTTGCCCCCCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTGGCAAGGCAGACTAACCGAA
TCAGCCACCAAGTGAGAGACCATCCCCAGTATGTAAGGTGGAGAGTGGTT
AGCGAGTACAACTAATGACGGGCTCTGGTCTCATGTGCATGTGCCCACAT
AGCCATATGCATCACATGCACGCATCTCCCATATAAAGCAGATGGACAGA
CGGACACTCCATGCCCTTTCGATGCTTTTGTCTCAGGTATGGTTATCACT
CACAGGGGATTGTAGATGGAAAGGATCCGTCAGGACCCATTTCTCAGTAG
TACTGAGTTGCCTTTGTGTCATTCCTCCCCACCCCTGAAGCTTACAGGGT
CCTGGCTCATGTGTACACCCATGGACATGGACATCCCCAGTCTAATGAGG
AAGCCCAACCCAAGAAGTTCAAGTTGAGTAATTGTTGTCAAGACAACCAC
AGTTGACAGGGTGGTACCAGATGTTTTTATGTCGCGCAGGTTAAATCGTG
TTCCTAACTTGGATTCAGACAGCATGAAGGGCAGAGTGCCAAGAGCTTGG
AAACCAACTTGAGCTTCAGGTTGGAAGTGAGCATGAACTCGGTGTCTCTC
ATGATTCCGCACCTTTTTACGTGGGTCTCCTGCCTCACTCTTTAGTTATT
TCCATGGCCTATACGTACCAAGAGCCTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_m02.b1 MSMg01no280_m02.b1 CHROMAT_FILE:
MSMg01no280_m02.b1 PHD_FILE: MSMg01no280_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:40 2005
         (293 letters)



>mm_chr3_27315769_27316461
          Length = 693

 Score =  516 bits (267), Expect = e-151
 Identities = 285/293 (97%), Gaps = 4/293 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaagtgttttgttttttttttaaaaaaaaaaagactcttcctgtgattgaacaccctta 60
           ||||||||||||||||||||||    ||||||||||||| ||||||| |||| | |||||
Sbjct: 205 tgaagtgttttgtttttttttt----aaaaaaagactctccctgtgaatgaatagcctta 260

                                                                       
Query: 61  aaaaccattccactgcatctgccttcacccgcctgtgactgccgcagggaatgcagaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaccattccactgcatctgccttcacccgcctgtgactgccgcagggaatgcagaagt 320

                                                                       
Query: 121 gacgtcacagtgggccaaaagacacacttcgatggaaggatgagcttccgaaggccagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacgtcacagtgggccaaaagacacacttcgatggaaggatgagcttccgaaggccagag 380

                                                                       
Query: 181 ctttggcaaaaatagatttaccttgataccatcagtgtacacgtctaattacactaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttggcaaaaatagatttaccttgataccatcagtgtacacgtctaattacactaatca 440

                                                                
Query: 241 ccatagtcgataacaaaatacagaactctctagtgcataactctatcaatata 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatagtcgataacaaaatacagaactctctagtgcataactctatcaatata 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no280_m02.g1 MSMg01no280_m02.g1 CHROMAT_FILE:
MSMg01no280_m02.g1 PHD_FILE: MSMg01no280_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:40 2005
         (289 letters)



>mm_chr3_27462618_27463306
          Length = 689

 Score =  458 bits (237), Expect = e-133
 Identities = 276/289 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctggcaaggcagactaaccgaatcagccaccaagtgagagaccatccccagtatgtaa 60
           |||||||||||||||||| | ||||||||||||||||||||||||||   ||||||||||
Sbjct: 595 ccctggcaaggcagactagctgaatcagccaccaagtgagagaccatagtcagtatgtaa 536

                                                                       
Query: 61  ggtggagagtggttagcgagtacaactaatgacgggctctggtctcatgtgcatgtgccc 120
           | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gatggagagtggttagcaagtacaactaatgacgggctctggtctcatgtgcatgtgccc 476

                                                                       
Query: 121 acatagccatatgcatcacatgcacgcatctcccatataaagcagatggacagacggaca 180
           ||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct: 475 acatagccatatgcatcacatgcacgcgtcccccatgtaaagcagatggacagacggaca 416

                                                                       
Query: 181 ctccatgccctttcgatgcttttgtctcaggtatggttatcactcacaggggattgtaga 240
           |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 415 ctccatgccctttcgatgcttttgtctcgggtatggttatcactcacaagggattgtaga 356

                                                            
Query: 241 tggaaaggatccgtcaggacccatttctcagtagtactgagttgccttt 289
           ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tggaaagaatccgtcaggacccatttctcagtagtactgagttgccttt 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)