Query= MSMg01no280_m02.b1 MSMg01no280_m02.b1 CHROMAT_FILE:
MSMg01no280_m02.b1 PHD_FILE: MSMg01no280_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:40 2005
(293 letters)
>mm_chr3_27315769_27316461
Length = 693
Score = 516 bits (267), Expect = e-151
Identities = 285/293 (97%), Gaps = 4/293 (1%)
Strand = Plus / Plus
Query: 1 tgaagtgttttgttttttttttaaaaaaaaaaagactcttcctgtgattgaacaccctta 60
|||||||||||||||||||||| ||||||||||||| ||||||| |||| | |||||
Sbjct: 205 tgaagtgttttgtttttttttt----aaaaaaagactctccctgtgaatgaatagcctta 260
Query: 61 aaaaccattccactgcatctgccttcacccgcctgtgactgccgcagggaatgcagaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaccattccactgcatctgccttcacccgcctgtgactgccgcagggaatgcagaagt 320
Query: 121 gacgtcacagtgggccaaaagacacacttcgatggaaggatgagcttccgaaggccagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacgtcacagtgggccaaaagacacacttcgatggaaggatgagcttccgaaggccagag 380
Query: 181 ctttggcaaaaatagatttaccttgataccatcagtgtacacgtctaattacactaatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttggcaaaaatagatttaccttgataccatcagtgtacacgtctaattacactaatca 440
Query: 241 ccatagtcgataacaaaatacagaactctctagtgcataactctatcaatata 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatagtcgataacaaaatacagaactctctagtgcataactctatcaatata 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no280_m02.g1 MSMg01no280_m02.g1 CHROMAT_FILE:
MSMg01no280_m02.g1 PHD_FILE: MSMg01no280_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:40 2005
(289 letters)
>mm_chr3_27462618_27463306
Length = 689
Score = 458 bits (237), Expect = e-133
Identities = 276/289 (95%)
Strand = Plus / Minus
Query: 1 ccctggcaaggcagactaaccgaatcagccaccaagtgagagaccatccccagtatgtaa 60
|||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct: 595 ccctggcaaggcagactagctgaatcagccaccaagtgagagaccatagtcagtatgtaa 536
Query: 61 ggtggagagtggttagcgagtacaactaatgacgggctctggtctcatgtgcatgtgccc 120
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gatggagagtggttagcaagtacaactaatgacgggctctggtctcatgtgcatgtgccc 476
Query: 121 acatagccatatgcatcacatgcacgcatctcccatataaagcagatggacagacggaca 180
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct: 475 acatagccatatgcatcacatgcacgcgtcccccatgtaaagcagatggacagacggaca 416
Query: 181 ctccatgccctttcgatgcttttgtctcaggtatggttatcactcacaggggattgtaga 240
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 415 ctccatgccctttcgatgcttttgtctcgggtatggttatcactcacaagggattgtaga 356
Query: 241 tggaaaggatccgtcaggacccatttctcagtagtactgagttgccttt 289
||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tggaaagaatccgtcaggacccatttctcagtagtactgagttgccttt 307
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|