BAC Information

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BAC

Clone NameMSMg01-280N06
Chromosome3 (Build37)
Map Location 28,683,367 - 28,683,606
singlet/doubletsinglet
Overlap geneEif5a2
Upstream geneE030011K20Rik, Pld1, Tnik, Slc2a2, EG624446
Downstream geneRpl22l1, Gm1527, 6130401L20Rik, LOC100040676
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280N06.T7 (MSMg01no280_n06.b1)MSMg01-280N06.TJ (MSMg01no280_n06.g1)
ACCAG417821AG417822
length765766
length of high quality
(start - end)
320 (45 - 364)239 (127 - 365)
definitionCHROMAT_FILE: MSMg01no280_n06.b1 PHD_FILE: MSMg01no280_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:46 2005CHROMAT_FILE: MSMg01no280_n06.g1 PHD_FILE: MSMg01no280_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAAACCAAATGTCTGGGAAGCACCTGAAAAGGTGTTC
AACATCCTTAATCATCATGTAAACGCAAATCAAAACAACCCTCAGATTCT
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTTCAGGTGACAGCAG
ATGCTGGCTAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTAGTTCCTCAGA
AAATTGGACATCATAATACTGGAAGATCCAGCAATACCTCTCCTGGGCAT
ATACCCAGAAGATGTTTTTTCTTGCCCCCCCGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAACTGGAAACAACCCAGATAT
CTCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACCATGGA
GTAGTACTCAGGTATTAAAAACAATGAATTTATTTCATGCTAGGCAAATG
GATGTATCTGGAGGATATCATTCTTAATGTGGTAACCCAATCACAAAAGA
AGTCATTTGATATGCATTCACTGATAAGCGGATATTAGCCCAGAAACTTA
GACTATCCAAGATACAATTTGCAAAACACATAAAACTCAAGAAGAAGGAA
GTGTGGATAGTTCGCTCCTTCTTAGAATGGGGAACGAAATATCCATGGAA
GGAGTTACAGAGCCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTATTTTGAATGCCAGTTTGGCAGCC
AGCCAAAGTGGATTGTGATTATCTCCTCATTTTAATAATTTAAAAAATAA
GAGAATTGGGAGAAAATGTTAATATTTACAGATTTAATTTGTGTCTTCTT
AAAATAAGTTCAGGATACAAGAAAGTGTGTCTCCTGACTCCCATTCCAAG
ATTGGCTTAGATTTGAATTGTTAATTTTCATTAATTTTCTCAAAAGAATG
CATACTTGTCTGGGGCTTTGTGGTGGTATAAAATAGAAAATGGTTCTGGA
TCCTTTGAGGGAGTTTCATTTTGTTCACCCGCACACATGGCTTGCTTGGC
TTCCTCTTTGGCATATTTTTTTAATGTCTAAATAAAAAGAACACTCTACT
CTAAATTAAATAAATTAAATATTTCTGGATTTATTGCACTTTTATCTGTC
ATTTGAAGACCATTTCTTATAGGGAAAGCTATAGATCTTCATATGATCAG
TGGATTGGCAGAACTATGACTTCTAAATCCAAATTATACAGTTATTTCAT
GTATATTTATGTGCCTGCATGCACACATACACATGTGGAAGCCAGACACT
GAATGTGCCTTTGTGTATGTGCACACATACACATGTGGAAGCCAGACACT
GAATGTGCCTTTGTGGAAGTGTGTGCGTGTGCGTGTATGTATATAATGTG
TGTGTGAAAACCAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_n06.g1 MSMg01no280_n06.g1 CHROMAT_FILE:
MSMg01no280_n06.g1 PHD_FILE: MSMg01no280_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:46 2005
         (239 letters)



>mm_chr3_28683167_28683806
          Length = 640

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%), Gaps = 1/240 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattttaataatttaaaaaataagagaattgggagaaaa-tgttaatatttacagattt 59
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tcattttaataatttaaaaaataagagaattgggagaaaaatgttaatatttacagattt 260

                                                                       
Query: 60  aatttgtgtcttcttaaaataagttcaggatacaagaaagtgtgtctcctgactcccatt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttgtgtcttcttaaaataagttcaggatacaagaaagtgtgtctcctgactcccatt 320

                                                                       
Query: 120 ccaagattggcttagatttgaattgttaattttcattaattttctcaaaagaatgcatac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaagattggcttagatttgaattgttaattttcattaattttctcaaaagaatgcatac 380

                                                                       
Query: 180 ttgtctggggctttgtggtggtataaaatagaaaatggttctggatcctttgagggagtt 239
           |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 381 ttgtctggggctttgtggtggtataaaatagaaaatggttttggatcctgtgagggagtt 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 640
Length adjustment: 9
Effective length of query: 230
Effective length of database: 631
Effective search space:   145130
Effective search space used:   145130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)