BAC Information

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BAC

Clone NameMSMg01-280P19
Chromosome3 (Build37)
Map Location 129,033,931 - 129,181,890
singlet/doubletdoublet
Overlap geneEnpep, LOC100043415, LOC435755, LOC668840
Upstream geneLOC100043393, EG668831, Pitx2
Downstream geneElovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280P19.T7 (MSMg01no280_p19.b1)MSMg01-280P19.TJ (MSMg01no280_p19.g1)
ACCAG417934AG417935
length751756
length of high quality
(start - end)		683 (69 - 751)364 (385 - 748)
definitionCHROMAT_FILE: MSMg01no280_p19.b1 PHD_FILE: MSMg01no280_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:58 2005CHROMAT_FILE: MSMg01no280_p19.g1 PHD_FILE: MSMg01no280_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,181,209 - 129,181,890)(129,033,931 - 129,034,290)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGGTAATACTCTTACAATTTCCTGATTGTTCCATGATCCAGCA
GACTAATTTGCTATGTATTAAAACGCATATTCCATAGCAAGCTAGTTACC
GTGGCATGCCTTTAATCCCAGGTCTTGGGAGGCAAAGGTAGGTGGATCTC
TATGAGTTTGGAACCAACCTGTTTTACTTGAGTTCCAGGCCAGTTAGGGC
TACATAGTGAGATCTTATCCACAGAATAGGTTCAAATCTGGCCTCAGCTG
GCCTTGGCTTTGAACCAAGAAACTTTAGAATGAAAAGGAACCCTCATATA
TCACATATGTCATGATGAAAGCTACCTGAAGTATCATTACTAGTAATTAA
TTTCCTTTATGAGAAACTGCTCTTCTTGTGTAATACTGCAATATGGAACC
AGGTAGAATGCGTGGATAACCTTAGCCAGATTTTTCAGATGCTAGTAGCT
GATCAGTTTAGGTAAGACTGGCTTTGGACCTTGTAATCAATATGGAATTG
TATCTGTTTGAACCGAAAGCAGAACCATCCTGCTAACCACCAATGAAAGG
TAGGCGGGAGACCATCGTAAGCATTAGCATGACCTAAAACTGAAGTTTAA
ATCCAGACTGCTGGGTGTTTAAAGCACTTGGCAGATGTAATGTGGAAGAC
AGTTATTCTAGAATCATGTCAGGCAGTTTGAGCCAACGGATGAAAACTTT
C

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAAGGAGCTTACACCGTTTAC
CAAGAACTGATAAAAGCCACTGGGCCACGTGAATATCAGATAGAAAGTAA
TAGATTAGGTAGAATATATTAGTTTTATAATTATAATTATTTAATGTATA
TTTTAAACACTTCTGCTTGGGACACTGCAGGGAAGAAAAACACTTGTGGC
TGCCTGTTATGTGGTAAAGGCTTGGTTAGCATTACTACTGCCTGCTTAGT
GATAGTTGGCAGCTCCAAGGTTTATCCATATGCCATCACTGATCCAGGTT
TTAAGCATTCCCCGATTGTCTAGCTAGACCCCTAGTTCTGATCACAGAAG
AAGAGAAAACACAGCCAGGCTTTTCTTCTTAGATGAACACCTAAGGACCC
GTCATATCTTTTGTAATTTTCGTTACGATTCTTCTCCAGTAAACTGCACG
AAATAACAATTGACACTTAATGTAATTGTCATTGCAAATGAAATTGTCAT
CCCTTGTGAAATCACTGTGATATAGCCCCAAAACACCAGTGGTGAAATTT
ATCAAATACTTATATTCATAAACCTCTGAGGCACTTTGTGTGGATGTGTA
GAGTCAGATGCAGTTGCGATTTATCCCGGTGTCATTAATAAATTCTCTAC
AACTGGCATTGTATTTACAATTATTCACTATTACTGAATTCTCTTCAACT
GGCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_p19.b1 MSMg01no280_p19.b1 CHROMAT_FILE:
MSMg01no280_p19.b1 PHD_FILE: MSMg01no280_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:58 2005
         (683 letters)



>mm_chr3_129180808_129181890
          Length = 1083

 Score = 1295 bits (670), Expect = 0.0
 Identities = 679/682 (99%)
 Strand = Plus / Minus

                                                                        
Query: 2    tacaatttcctgattgttccatgatccagcagactaatttgctatgtattaaaacgcata 61
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 1083 tacaatttcctgattgttccatgatccagcagactaatttgctatgtattaaaatgtata 1024

                                                                        
Query: 62   ttccatagcaagctagttaccgtggcatgcctttaatcccaggtcttgggaggcaaaggt 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 ttccatagcaagctagttaccgtggcatgcctttaatcccaggtcttgggaggcaaaggt 964

                                                                        
Query: 122  aggtggatctctatgagtttggaaccaacctgttttacttgagttccaggccagttaggg 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963  aggtggatctctatgagtttggaaccaacctgttttacttgagttccaggccagttaggg 904

                                                                        
Query: 182  ctacatagtgagatcttatccacagaataggttcaaatctggcctcagctggccttggct 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903  ctacatagtgagatcttatccacagaataggttcaaatctggcctcagctggccttggct 844

                                                                        
Query: 242  ttgaaccaagaaactttagaatgaaaaggaaccctcatatatcacatatgtcatgatgaa 301
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 843  ttgaaccaagaaactttagaatgaaaaggagccctcatatatcacatatgtcatgatgaa 784

                                                                        
Query: 302  agctacctgaagtatcattactagtaattaatttcctttatgagaaactgctcttcttgt 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783  agctacctgaagtatcattactagtaattaatttcctttatgagaaactgctcttcttgt 724

                                                                        
Query: 362  gtaatactgcaatatggaaccaggtagaatgcgtggataaccttagccagatttttcaga 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723  gtaatactgcaatatggaaccaggtagaatgcgtggataaccttagccagatttttcaga 664

                                                                        
Query: 422  tgctagtagctgatcagtttaggtaagactggctttggaccttgtaatcaatatggaatt 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663  tgctagtagctgatcagtttaggtaagactggctttggaccttgtaatcaatatggaatt 604

                                                                        
Query: 482  gtatctgtttgaaccgaaagcagaaccatcctgctaaccaccaatgaaaggtaggcggga 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603  gtatctgtttgaaccgaaagcagaaccatcctgctaaccaccaatgaaaggtaggcggga 544

                                                                        
Query: 542  gaccatcgtaagcattagcatgacctaaaactgaagtttaaatccagactgctgggtgtt 601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543  gaccatcgtaagcattagcatgacctaaaactgaagtttaaatccagactgctgggtgtt 484

                                                                        
Query: 602  taaagcacttggcagatgtaatgtggaagacagttattctagaatcatgtcaggcagttt 661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483  taaagcacttggcagatgtaatgtggaagacagttattctagaatcatgtcaggcagttt 424

                                  
Query: 662  gagccaacggatgaaaactttc 683
            ||||||||||||||||||||||
Sbjct: 423  gagccaacggatgaaaactttc 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no280_p19.g1 MSMg01no280_p19.g1 CHROMAT_FILE:
MSMg01no280_p19.g1 PHD_FILE: MSMg01no280_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:58 2005
         (364 letters)



>mm_chr3_129033731_129034494
          Length = 764

 Score =  688 bits (356), Expect = 0.0
 Identities = 359/360 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttctgatcacagaagaagagaaaacacagccaggcttttcttcttagatgaacacctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttctgatcacagaagaagagaaaacacagccaggcttttcttcttagatgaacacctaa 260

                                                                       
Query: 61  ggacccgtcatatcttttgtaattttcgttacgattcttctccagtaaactgcacgaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacccgtcatatcttttgtaattttcgttacgattcttctccagtaaactgcacgaaat 320

                                                                       
Query: 121 aacaattgacacttaatgtaattgtcattgcaaatgaaattgtcatcccttgtgaaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaattgacacttaatgtaattgtcattgcaaatgaaattgtcatcccttgtgaaatca 380

                                                                       
Query: 181 ctgtgatatagccccaaaacaccagtggtgaaatttatcaaatacttatattcataaacc 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgatatagccccaaaacaccagtagtgaaatttatcaaatacttatattcataaacc 440

                                                                       
Query: 241 tctgaggcactttgtgtggatgtgtagagtcagatgcagttgcgatttatcccggtgtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgaggcactttgtgtggatgtgtagagtcagatgcagttgcgatttatcccggtgtca 500

                                                                       
Query: 301 ttaataaattctctacaactggcattgtatttacaattattcactattactgaattctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaataaattctctacaactggcattgtatttacaattattcactattactgaattctct 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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