Query= MSMg01no288_b22.b1 MSMg01no288_b22.b1 CHROMAT_FILE:
MSMg01no288_b22.b1 PHD_FILE: MSMg01no288_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:08 2005
(703 letters)
>mm_chr3_140592834_140593935
Length = 1102
Score = 1301 bits (673), Expect = 0.0
Identities = 691/697 (99%), Gaps = 1/697 (0%)
Strand = Plus / Minus
Query: 5 gaattcttaaaagtcctagcgaaaatatatgggatctgtaaatgtaacaactatttatac 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gaattcttaaaagtcctagtgaaaatatatgggatctgtaaatgtaacaactatttatac 841
Query: 65 aataaatcacaaaaagtatcttatccattttttttgtcaaccttaaaaacggagatagac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 aataaatcacaaaaagtatcttatccattttttttgtcaaccttaaaaacggagatagac 781
Query: 125 acattctggttatttattaaatctgtctaaagatcttacttctattttcaattatcttat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 acattctggttatttattaaatctgtctaaagatcttacttctattttcaattatcttat 721
Query: 185 tgtgtatttattattagaacattggctttattcttatgctattgatttttcattcttgac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tgtgtatttattattagaacattggctttattcttatgctattgatttttcattcttgac 661
Query: 245 aacagctactattgcattggtaacatagacaggttaggcagccccaataaaggtagtttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aacagctactattgcattggtaacatagacaggttaggcagccccaataaaggtagtttt 601
Query: 305 tatgcctgtcaagtgggtctattttattcaactgccctttcaacagtagcctttaagaga 364
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tatgcctgtcaagtgggtctgttttattcaactgccctttcaacagtagcctttaagaga 541
Query: 365 taaatcagagcaagtatgttgtctaactcaagaggcacagatgtgaaattgcaaagatgt 424
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tagatcagagcaagtatgttgtctaactcaagaggcacagatgtgaaattgcaaagatgt 481
Query: 425 ttaatttattttctaattaggaaaaaaatgttcttcagtcaagatatgatttagaaaata 484
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttaatttattttctaattagg-aaaaaatgttcttcagtcaagatatgatttagaaaata 422
Query: 485 ctttcccttgtccattcatgctgaatggcatgtgtgaggatatgaggatcctgtctgttg 544
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 421 ctttcccttgtccattcatgctgaatggcatgtgtgaggatgtgaggatcctgtctgttg 362
Query: 545 tcatacaaggccattatgtacttaagacacagccctgagtggccactttccaaacagaac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcatacaaggccattatgtacttaagacacagccctgagtggccactttccaaacagaac 302
Query: 605 aaattgcttgcatatttatttgaggttagatacatttttaaagtgcttttggaaggaaag 664
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaattgcttgcatatttacttgaggttagatacatttttaaagtgcttttggaaggaaag 242
Query: 665 gttcttcacctttttgtaaacaacttaattttatttg 701
|||||||||||||||||||||||||||||||||||||
Sbjct: 241 gttcttcacctttttgtaaacaacttaattttatttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1102
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1092
Effective search space: 756756
Effective search space used: 756756
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no288_b22.g1 MSMg01no288_b22.g1 CHROMAT_FILE:
MSMg01no288_b22.g1 PHD_FILE: MSMg01no288_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:08 2005
(671 letters)
>mm_chr3_140437757_140438827
Length = 1071
Score = 1236 bits (639), Expect = 0.0
Identities = 663/671 (98%)
Strand = Plus / Plus
Query: 1 tttaaagcactgaaatggtgggaagaacagtttggccttgaccacagaccaccaaaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tttaaagcactgaaatggtgggaagaacagtttggccttgaccacagaccaagaaaataa 260
Query: 61 aatggtagagctgaattatctgtttattttcatggctactctttctagctcatagttgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 aatggtagagctgaattatctgtttattttcatggctactctttctagctcatggttgtc 320
Query: 121 tttgcatctgattacttagctgcatgcatttatccaatttactaaaatgtcatatgaact 180
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 tttgcatctgattacttagctacatgcatttatccaatttactaaaacgtcatatgaact 380
Query: 181 tacagagagtaatcagtttaatgaaacattatccaaactcctgatagactttcacatatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacagagagtaatcagtttaatgaaacattatccaaactcctgatagactttcacatatg 440
Query: 241 aataaagctaactcaacttgttcattttccccatctctcccctttattcatcttgtctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataaagctaactcaacttgttcattttccccatctctcccctttattcatcttgtctta 500
Query: 301 cacttccctttgtttcagcctttcaccttgcttctgcctccatacttgggcagtgataaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacttccctttgtttcagcctttcaccttgcttctgcctccatacttgggcagtgataaa 560
Query: 361 aacaatatcagggaacttacgaagtgtcaggattttgtacaaatgcaacaaagggaaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacaatatcagggaacttacgaagtgtcaggattttgtacaaatgcaacaaagggaaaac 620
Query: 421 atgagctgtgattctggaaccacaaaggttggaaatacacctaacacggatcctgcagca 480
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 621 atgagctgtgattctggaaccacaaaggttgggaatacacctaagacggatcctgcagca 680
Query: 481 gaaaagtgaatcagcaaattcctaagaaatcataggtctgaaaacaagtcagaagatatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaaagtgaatcagcaaattcctaagaaatcataggtctgaaaacaagtcagaagatatg 740
Query: 541 aatgagagagaaaacagaagcaaccccgtggcttcagcagagttcatgtttattgctcta 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatgagagagaaaacagaagcagccccgtggcttcagcagagttcatgtttattgctcta 800
Query: 601 tattatattccctacacagcacaagcactctaataaaactttgaattatttttggttttc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tattatattccctacacagcacaagcactctaataaaactttgaattatttttggttttc 860
Query: 661 aaggctatact 671
|||||||||||
Sbjct: 861 aaggctatact 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
