BAC Information

Click to search

BAC

Clone NameMSMg01-288G09
Chromosome3 (Build37)
Map Location 69,928,532 - 70,092,884
singlet/doubletdoublet
Overlap genenone
Upstream geneKpna4, Arl14, Ppm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
Downstream geneLOC100041384, LOC625868, LOC670542, EG625901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288G09.T7 (MSMg01no288_g09.b1)MSMg01-288G09.TJ (MSMg01no288_g09.g1)
ACCAG418236AG418237
length723719
length of high quality
(start - end)		347 (73 - 419)284 (78 - 361)
definitionCHROMAT_FILE: MSMg01no288_g09.b1 PHD_FILE: MSMg01no288_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:28 2005CHROMAT_FILE: MSMg01no288_g09.g1 PHD_FILE: MSMg01no288_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,092,538 - 70,092,884)(69,928,532 - 69,928,815)
sequence
ACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAACAAATTAACTGTAATTCTAGGAATAAAATGAATCGGTAA
TTAGAGAAGAACACAAACAGTTGGCTCCGATTTTTTTCGCGAAGCAATGT
TTATCACAGAGAAAAGCAAGAAACCACACAAATACTCTCAGGAGAATTGT
TTGAATAATTTACGTTATACACAGAGAGTGCAGCTGTTCAAGATATTGTG
GTAGGTCAGCATCTCTCTAACCCTCTTAGCAATACAAGTGTTTCATCAGT
GTAAAAAGTGGATACAAGAAGAACTCCTGTTTGACATGGAGTGAGGGCAC
TAACAAAACTGACCCTGTTTTTACAATGCTCTGTGTCCTTTGAGAATCAA
ATAAATCGTGTACACATTAACACCCCAAAGGTTTCACAATAGAATCTGGG
AAACAAAAGCGGGCTACAAGATACTTAAAATTATTTCAAAAAGTCAGCAA
ATAAAAACCAATGAAGTTAAAATCATGTGCCCAGCTCTAACATTTATAAC
ACAACTCCTGAACCTAAGGCTCCGGCAACATACTAGAATAGAGGATGGAA
AGATTATAAGGGCCAGAGGAATGATAGATCTGCTGTGGGGCTCCACTCCT
AAGTGAAGAAATATATGCAACTAGAGACCACAGAGAGAGGGAGAATAACC
TAGTTAATTATCCATGTGGTTGG

TCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTAAAAAACAAGCAATGTGC
TAACTATACGCTATGGGGCTTTCGTGAAAGGGGAAGAAAATGTCTTGACC
TGTTTGTTCTTCGACACTCAGAGCTACATTTTCCCACAAGGAACTCATGC
AGTATTTCATGCTTTTACTTTCTAGTGAAGTCTCAGGTACTCTTGATACC
TTCTGTCTTTGGGTATTACAGAATTCCTAGAGTTTGAAATAATATTAGGA
ATAATAATGTTGGTAGAGAGTAACTAGGGTAGTAGTTGGCAAAACCTTTC
TCGAGGACTTATGTATTTTTCCACCCCCTCCCCACCCACATCAAAAGACA
TTGCAACATTGTCACTAACCACCCCAATCAAATGTTAAAAGATTTCACTG
TTCTCTACAATTCGATCAGCTAGGGAGGGTTACATTGTAATGAGTCTCAG
CACAGCAGTGATTTTCTTTGTCTGCAACCTTGTGAGTTCTGCTAGAGGGC
AACTCTTCTTTAAACTGTGACTTCATCACCACGAAGAAATATCCATCATC
TGATAGACACTATCAGGCAGTGGCAGGAGTGAGCAGTCATGTGACAACTC
TCCAAGGCTCTGGTTGGAGCAAGAGAGGCCATTTCTATTCACATTTGTTG
GCCAAAGCAAATCACTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_g09.b1 MSMg01no288_g09.b1 CHROMAT_FILE:
MSMg01no288_g09.b1 PHD_FILE: MSMg01no288_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:28 2005
         (347 letters)



>mm_chr3_70092338_70093084
          Length = 747

 Score =  648 bits (335), Expect = 0.0
 Identities = 344/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taattctaggaataaaatgaatcggtaattagagaagaacacaaacagttggctccgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 547 taattctaggaataaaatgaatcggtaattagagaagaacacaaacagttggctttgatt 488

                                                                       
Query: 61  tttttcgcgaagcaatgtttatcacagagaaaagcaagaaaccacacaaatactctcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tttttcgcgaagcaatgtttatcacagagaaaagcaagaaaccacacaaatactctcagg 428

                                                                       
Query: 121 agaattgtttgaataatttacgttatacacagagagtgcagctgttcaagatattgtggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agaattgtttgaataatttacgttatacacagagagtgcagctgttcaagatattgtggt 368

                                                                       
Query: 181 aggtcagcatctctctaaccctcttagcaatacaagtgtttcatcagtgtaaaaagtgga 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 367 aggtcagcatctctctaaccctcttagcagtacaagtgtttcatcagtgtaaaaagtgga 308

                                                                       
Query: 241 tacaagaagaactcctgtttgacatggagtgagggcactaacaaaactgaccctgttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tacaagaagaactcctgtttgacatggagtgagggcactaacaaaactgaccctgttttt 248

                                                          
Query: 301 acaatgctctgtgtcctttgagaatcaaataaatcgtgtacacatta 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 acaatgctctgtgtcctttgagaatcaaataaatcgtgtacacatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no288_g09.g1 MSMg01no288_g09.g1 CHROMAT_FILE:
MSMg01no288_g09.g1 PHD_FILE: MSMg01no288_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:28 2005
         (284 letters)



>mm_chr3_69928332_69929015
          Length = 684

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccattaaaaaacaagcaatgtgctaactatacgctatggggctttcgtgaaaggggaaga 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatcaaaaaacaagcaatgtgctaactatacgctatggggctttcgtgaaaggggaaga 260

                                                                       
Query: 61  aaatgtcttgacctgtttgttcttcgacactcagagctacattttcccacaaggaactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgtcttgacctgtttgttcttcgacactcagagctacattttcccacaaggaactca 320

                                                                       
Query: 121 tgcagtatttcatgcttttactttctagtgaagtctcaggtactcttgataccttctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcagtatttcatgcttttactttctagtgaagtctcaggtactcttgataccttctgtc 380

                                                                       
Query: 181 tttgggtattacagaattcctagagtttgaaataatattaggaataataatgttggtaga 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tttgggtattacagaattcctagagtttgaaatgatattaggaataataatgttggtaga 440

                                                       
Query: 241 gagtaactagggtagtagttggcaaaacctttctcgaggactta 284
           ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtaacaagggtagtagttggcaaaacctttctcgaggactta 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |