Query= MSMg01no288_k15.b1 MSMg01no288_k15.b1 CHROMAT_FILE:
MSMg01no288_k15.b1 PHD_FILE: MSMg01no288_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:47 2005
(565 letters)
>mm_chr3_51689179_51690142
Length = 964
Score = 994 bits (514), Expect = 0.0
Identities = 551/566 (97%), Gaps = 8/566 (1%)
Strand = Plus / Plus
Query: 5 gaattctttcattgacgagagagagagacactgcccgaagccacagtttcctcccctgca 64
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctttcagtga--agagagagagacactgcccgaagccacagtttcctcccctgca 259
Query: 65 ccctggggtaaactcccccaagggtccctaagacaatctcccc-tccccaccactgctga 123
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 260 ccctggggtaaaatcccccaagggtccctaagacaatctccccgtccccaccactgctga 319
Query: 124 aggctctcaaaaaa----cattctgggagcaaggaacaagagattctgagatgggtgact 179
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aggctctcaaaaaaaaaacattctgggagcaaggaacaagagattctgagatgggtgact 379
Query: 180 gaggaggtgggagagactccttctctggagttctttaaaaatagagcagccatctgggat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaggaggtgggagagactccttctctggagttctttaaaaatagagcagccatctgggat 439
Query: 240 ggtttagatacggcctctctgaaaggcgggggattggagggggatggaagatctaaggcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggtttagatacggcctctctgaaaggcgggggattggagggggatggaagatctaaggcc 499
Query: 300 catctcatcttggattttctgatatttcattttcaagttttactcatggcaagagcctga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 catctcatcttggattttctgatatttcattttcaagttttactcatggcaagagcctga 559
Query: 360 aaagagctagaaactcacttttttttttcttttcaaccaatcactacatcccattttgct 419
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 560 aaagagctagaaattcacttttttttt-cttttcaaccaatcactacatcccattttgct 618
Query: 420 tccaacggcaattctgctgcctcagtagcccccgtgcttcagaggggcgatttggatggt 479
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 619 tccaacggcaattctgctgtctcagtagcccccgtgcttcagaggggcgatttggatgtt 678
Query: 480 atggctttttgtgtttcataggaagtttgggtgaaacttgacttccattctccctttcag 539
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atggccttttgtgttccataggaagtttgggtgaaacttgacttccattctccctttcag 738
Query: 540 aggaagctactatgggaggtgtgttt 565
||||||||||||||||||||||||||
Sbjct: 739 aggaagctactatgggaggtgtgttt 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space: 529470
Effective search space used: 529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_k15.g1 MSMg01no288_k15.g1 CHROMAT_FILE:
MSMg01no288_k15.g1 PHD_FILE: MSMg01no288_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:48 2005
(332 letters)
>mm_chr3_51875548_51876277
Length = 730
Score = 574 bits (297), Expect = e-168
Identities = 322/331 (97%), Gaps = 2/331 (0%)
Strand = Plus / Minus
Query: 2 cactgggcctggctctgaagtgactctcacagatgccacttttggagctggggactgttg 61
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 530 cactgggcctggctctgaagtgactctcacagatgttacttttggagctggggactgttg 471
Query: 62 ggttgtctcccccggtgcagcgcactgtaatataactcttgaccataggaatgaaccggg 121
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ggttgtctcccctggtgca--gcactgtaatataactcttgaccataggaatgaaccggg 413
Query: 122 gctttctgaaacccttcagtgttgcatactgtggtcttggtaggaactcactctttcata 181
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 412 gctttctgaaacccttcagtgttgcacactgtggtcttggtaggaactcactctttcata 353
Query: 182 ctggcgtaaataggacgcctgccataatctttgttctaatgccctgtcctcacccgtgga 241
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 352 ctggcgtaaataggacgcctgccataatctttgttctaatgcccggtcttcacccgtgga 293
Query: 242 ttggttaacactcatgtggtatttatagtatgtgctgtactaatcagtaaaacactcagt 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 292 ttggttaacactcatgtggtatttatagtatgtgctgtactaatcagtaaaacattcagt 233
Query: 302 gactcatttcatcttcagagctaaccaggga 332
|||||||||||||||||||||||||||||||
Sbjct: 232 gactcatttcatcttcagagctaaccaggga 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 730
Length adjustment: 9
Effective length of query: 323
Effective length of database: 721
Effective search space: 232883
Effective search space used: 232883
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
