XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TATACAGCTGTCATTCAGGGATAAGATTAGAAGTGGGAACGACTGTTTTC
TACAAAGAGCTGCAGTGGGCTACTGAGATGTCTCCATCCTGGCCTACTGC
AGGCAGTCGCTGTCATGGTATGCTGTCCCCAACAAGTTATTTATGTGGTA
GCCAGGAAAACTGTATTTTGGTGGCTGTCTCCTTATCTTTGCAATGCCTT
TGTGTGGCGGCTACACATCCTTGAGGCTGTAGATAGGTTGTCCCCACTGT
ATAAAAAACTAAAACATCAGGATATTTTCCCACACGTGTGCACTAACAAA
GGTGTACAAACTCTTTGGCATCGTTAGAATATCTTTTTCAACATAGTCTG
AACATCCCCTACCACCCCGCGAGATTTTCTGAAGAACTGTGGAAATAAGG
TCCCTGAAAGGAGATCAGTCTATCAGTTGGGAGGGAAAGGGGGTCAACTT
ATGTCATGACTGTCATCACCTACCAAAGAAAAATTTTATACCACAATGGA
AAAACCATTGTCTCACCAACTCTACCTTGAAACAGCCCAGTGAAGTATCT
TTGGAGTGTTTGCTTTTGCAGAGGCATTGAAGAGTGTCTCTTGAGCGAAT
TCTTTAAAAAGCTGAACATTTTTTTCTCATCACAGGGAGACCAGCATACA
TAAATAAAGGCATTGCACAAATACTTAAGGATTTAACAGGAGTTCAGTGA
CCA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGTTCTCAAGCAAGGGTTCTTCACTCTT
ATCTATTAAGCAGGTTATTTTACTCCTACCATATGCCAGGCAATATCATA
GGCATTTGGGTGATAGAGATGACAAAGTCTCTGCTTTCAAGAAAATGCTT
ATTTTGTCATGATGTTATTTATGAACAACCAAGCCTATAAGGGGAGGTGC
TGATGCTAAGGACCTGTTCCCCAATTGTTCCTTGATTTGTCAGTAAAGAA
AGTCCTGGGGAAATTGCTGGGCTAAAGGTAGAGACATGATTTCTGGATAT
CTAGAGGCAGGCTTAATGATGTCGCACACCCCACAGGAGTTTTCAAGGTG
CCTTGGAACAAGAGGAACCAACCAGCCATATGAGGTCACGGGAAGAGCAG
AGTCCTGGGGCCATTACTACATTCAGGTAGTCATGGATGTTTCGCATGGG
TCAGATGGGATTAGCCAGTAAATTTAGAGCAGGTGGAAGAGACTGAGTTT
AAAAAAAAAGAACTGTGCACAATAGCTATGCATCAATGGATGACTTATAC
TGGGGTCCCAGGGGCAGGTTACATTAAGCTGAAAGTCTTTATTCCATCTC
TCAACATCATAAAGAGTGTGGAGCAGGTATAAAGCGGGACACATGCCCCT
TATGTTAAAAGAATTAAACATTTTAAGTCAGTTTTCAAAAGCCGTTATTT
AATG

Query= MSMg01no288_k19.b1 MSMg01no288_k19.b1 CHROMAT_FILE:
MSMg01no288_k19.b1 PHD_FILE: MSMg01no288_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:48 2005
         (701 letters)



>mm_chr3_14532669_14533769
          Length = 1101

 Score = 1294 bits (669), Expect = 0.0
 Identities = 690/701 (98%), Gaps = 8/701 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatacagctgtcattcagggataagattagaagtgggaacgactgttttctaca 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatacagctgttattcagggataagattagaagtgggaacgactgttttctaca 264

                                                                       
Query: 65  aagagctgcagtgggctactgagatgtctccatcctggcctactgcaggcagtcgctgtc 124
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 aagagctgcagtgggctactgagatgtctccatcctggcctactgcgggcagtcgctgtc 324

                                                                       
Query: 125 atggtatgctgtccccaacaagttatttatgtggtagccaggaaaactgtattttggtgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atggtatgctgtccccaacaagttatttatgtggtagccaggaaaactgtattttggtgg 384

                                                                       
Query: 185 ctgtctccttatctttgcaatgcctttgtgtggcggctacacatccttgaggctgtagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtctccttatctttgcaatgcctttgtgtggcggctacacatccttgaggctgtagat 444

                                                                       
Query: 245 aggttgtccccactgtataaaaaactaaaacatcaggatattttcccacacgtgtgcact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggttgtccccactgtataaaaaactaaaacatcaggatattttcccacacgtgtgcact 504

                                                                       
Query: 305 aacaaaggtgtacaaactctttggcatcgttagaatatctttttcaacatagtctgaaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacaaaggtgtacaaactctttggcatcgttagaatatctttttcaacatagtctgaaca 564

                                                                       
Query: 365 tcccctaccacccc----gcgagattttctgaagaactgtggaaataaggtccctgaaag 420
           ||||||||||        | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcccctacca----ttttgtgagattttctgaagaactgtggaaataaggtccctgaaag 620

                                                                       
Query: 421 gagatcagtctatcagttgggagggaaagggggtcaacttatgtcatgactgtcatcacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagatcagtctatcagttgggagggaaagggggtcaacttatgtcatgactgtcatcacc 680

                                                                       
Query: 481 taccaaagaaaaattttataccacaatggaaaaaccattgtctcaccaactctaccttga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taccaaagaaaaattttataccacaatggaaaaaccattgtctcaccaactctaccttga 740

                                                                       
Query: 541 aacagcccagtgaagtatctttggagtgtttgcttttgcagaggcattgaagagtgtctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacagcccagtgaagtatctttggagtgtttgcttttgcagaggcattgaagagtgtctc 800

                                                                       
Query: 601 ttgagcgaattctttaaaaagctgaacatttttttctcatcacagggagaccagcataca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttgagcgaattctttaaaaagctgaacatttttttctcatcacagggagaccagcataca 860

                                                    
Query: 661 taaataaaggcattgcacaaatacttaaggatttaacagga 701
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 taaataaaggcattgcacaaatacttaaggatttaacagga 901


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)