BAC Information

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BAC

Clone NameMSMg01-288P15
Chromosome3 (Build37)
Map Location 34,386,290 - 34,386,606
singlet/doubletsinglet
Overlap geneEG665636
Upstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727
Downstream geneEG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288P15.T7 (MSMg01no288_p15.b1)MSMg01-288P15.TJ (MSMg01no288_p15.g1)
ACCAG418656AG418657
length762757
length of high quality
(start - end)
323 (47 - 369)194 (124 - 317)
definitionCHROMAT_FILE: MSMg01no288_p15.b1 PHD_FILE: MSMg01no288_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:11 2005CHROMAT_FILE: MSMg01no288_p15.g1 PHD_FILE: MSMg01no288_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATACATGCATCTGCCGCGCTTGGTCTGGAAGACACTGTTCAGCC
CACAGTATTCAGGAAAGGTGTAGGTACCGATAAACTGTAGAAAAATGAGT
CTGTGTTTGGGGGGGGGGTGTCTTATGAATCAAAGGCCAGGATAATTCGA
ATAAAGGCACTAATCAAAAGAATGAATCAAACATTGGTATAGACCATGTA
GACATTACCACAATAGTATTAGACTCCACCTTTCTCTTTTCCTACTTCTA
AACATAACCACATCCTTTACATTCTAATCAACCTGGCCTCCAAGCAAGTA
CCTGTGTTGGGAGGTACTCTGTTCATGCACGTGATTGCCAGCACAGGCAT
CCATTAGTTCCAGCTAGCACCCCACATAAATATTGTTGTATTATTCACAG
GTGCGAGTAAGGAGATTGCCTGTGCTAAAGTAAATTGTTACAAAAAAAAA
AGTTGTTCAGTCCTTTGGTGTGAATACTAAGAAGAACTCTGAAATTTTTG
AGTAAATATTTCTCACAAGAAAGTCATAACCATCATCGTTTTCATGAATT
ACATGTTATGAATTATTATTATTAATAATAATTTTTTGAGCAGCATATGA
ACAGGAGATGTGATGTGTTCACGTGCTTTCTCTTTCCCCAAGAGAGTTGA
CAAAAGGATATTTGCTCATATATTCCGCGTAGTAGACTGTCTTGGATTAA
ATCTGTTTATGT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGAAAATACAGTGCATGAATGTAACTTGTCTATCGTGG
CAGTGCAGGTCAGTAATCACCCCGCTTGGAGGCATAAACAGATCTTCCCT
ATGGACCAGCCAGTCTAGTCAACAGTGATCTCTGGGTTCATAGAGGGACC
CTGTCTCAAAATTTACAACAGAAAGTGACTGAAGAAGACACTCAGTGCTC
ACCTCTGGCTTAGACAAATGCATTCTGGAATGCTACACCCACACACACAA
ATGCATATATATAAGCACATTCATATTCACATGCACATGCATACACACAC
ATGCATACACTTTCATGATTTCACCCCCCCCCCCACACATGCATGCACCC
CCACATAAATGCACGCACACCAGCACACACATGAACATACATATACACAC
ACATGAACACACATGCACACACACATGTATGCACTCCCCACATAAATGAA
CATACACCAGCACACACACATGCACATGCATATACACACACACATGAACA
CACATGCACACACACATACACGCATGCACCTCCACACACAAATGCATACA
CAGCAGCGTACACACACGCACATGCATGCACACATGCACACATACGCATG
CACCTCAAACACACTCATGCATATGCACACATGTAGATGAACACACATAC
ACACGCACACACAGACACACACTCTCCCTGATAGAAAATTAAGATTTTTT
TGTAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_p15.b1 MSMg01no288_p15.b1 CHROMAT_FILE:
MSMg01no288_p15.b1 PHD_FILE: MSMg01no288_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:11 2005
         (323 letters)



>mm_chr3_34386086_34386806
          Length = 721

 Score =  520 bits (269), Expect = e-152
 Identities = 306/319 (95%), Gaps = 2/319 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatacatgcatctgccgcgcttggtctggaagacactgttcagcccacagtattc 64
           |||||||||||| || ||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 521 gaattcatacattcagctgccacgctgggtctggaagacactgttcagcccacagtattc 462

                                                                       
Query: 65  aggaaaggtgtaggtaccgataaactgtagaaaaatgagtctgtgtttggggggggggtg 124
           |||||||||| |||||  ||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 461 aggaaaggtgaaggtatagataaactgtagaaaaatgagtctgtgttt--ggggggggtg 404

                                                                       
Query: 125 tcttatgaatcaaaggccaggataattcgaataaaggcactaatcaaaagaatgaatcaa 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 403 tcttatgaatcaaaggccaggataatttgaataaaggcactaatcaaaagaatgaatcaa 344

                                                                       
Query: 185 acattggtatagaccatgtagacattaccacaatagtattagactccacctttctctttt 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 acattgatatagaccatgtagacattaccacaatagtattagactccacctttctctttt 284

                                                                       
Query: 245 cctacttctaaacataaccacatcctttacattctaatcaacctggcctccaagcaagta 304
           |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 283 cctacttctaaacatagccacatcctttacattctaagcaacctggcctccaagcaagta 224

                              
Query: 305 cctgtgttgggaggtactc 323
           |||||||||||||||||||
Sbjct: 223 cctgtgttgggaggtactc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 721
Length adjustment: 9
Effective length of query: 314
Effective length of database: 712
Effective search space:   223568
Effective search space used:   223568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)