Query= MSMg01no289_d11.b1 MSMg01no289_d11.b1 CHROMAT_FILE:
MSMg01no289_d11.b1 PHD_FILE: MSMg01no289_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:29 2005
(539 letters)
>mm_chr3_47259216_47260151
Length = 936
Score = 919 bits (475), Expect = 0.0
Identities = 520/537 (96%), Gaps = 5/537 (0%)
Strand = Plus / Plus
Query: 3 tatattttagatattatccctctgtcaggttgaagtcttactgaagatcttttccccatc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tatattttagatattatccctctgtcaggttgaagtcttactgaagatcttttccccatc 264
Query: 63 tgtaggctgccatttttttcttattgactgggtctttgccttacagacacccaatatatt 122
|||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 265 tgtaggctgcca--tttttcttattgactgggtctttgccttaccgacactcaatatatt 322
Query: 123 cttataggaaggactcacagattgggctggttccgtgctaatcacattgtttaagtttat 182
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 323 attataggaaggactcacagactgggctggttccatgctaatcacattgtttaagtttat 382
Query: 183 ttccttcttttattcctaggtccacatatagtcatatactgatgcactgtaactcaagtt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttccttcttttattcctaggtccacatatagtcatatactgatgcactgtaactcaagtt 442
Query: 243 tcacataaagctttgaggacacaatctagtctctgctgtctaaaaataaaacaacagctg 302
|||||||||||||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct: 443 tcacataaagctttgaggacacaatcaagtctctgctgtctaaaaataaaagaa---ctg 499
Query: 303 cctgcatccttcccttatgtcgtccatggatgcaccagaaaagggctgatgtgattatta 362
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 500 cctgcatccttcccttatgtcaaccatggatgcaccaggaaagggctgatgtgattatta 559
Query: 363 tatcataaagatattatagaatattaaaatttaggcaaaggaatctaaaatcaatttgtt 422
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatcataaagatactatagaatattaaaatttaggcaaaggaatctaaaatcaatttgtt 619
Query: 423 ttatttttcttactgcttataatttatgaattataatgctattttataaatactttactg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttatttttcttactgcttataatttatgaattataatgctattttataaatactttactg 679
Query: 483 tttctatatttgagttagagttacatattttgattgtttattatgagaacacataat 539
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tttctttatttgagttagagttacatattttgattgtttattatgagaacacataat 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 936
Length adjustment: 10
Effective length of query: 529
Effective length of database: 926
Effective search space: 489854
Effective search space used: 489854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_d11.g1 MSMg01no289_d11.g1 CHROMAT_FILE:
MSMg01no289_d11.g1 PHD_FILE: MSMg01no289_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:29 2005
(229 letters)
>mm_chr3_47424810_47425438
Length = 629
Score = 443 bits (229), Expect = e-129
Identities = 229/229 (100%)
Strand = Plus / Minus
Query: 1 tctatttgccttcattgtctcactatttcattttagaaaatttgctgttctatggttctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tctatttgccttcattgtctcactatttcattttagaaaatttgctgttctatggttctg 370
Query: 61 aattagtatttgcacattgcgttctggaaaatacaaactcaccgaggaagaagaaatgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aattagtatttgcacattgcgttctggaaaatacaaactcaccgaggaagaagaaatgac 310
Query: 121 tacctcaagtgggaagggaaaatgggagctggctaatagcattttctgtactaatgcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tacctcaagtgggaagggaaaatgggagctggctaatagcattttctgtactaatgcact 250
Query: 181 gacctgaatttatatcttttatgtagtggacacatttgctctgcctgta 229
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gacctgaatttatatcttttatgtagtggacacatttgctctgcctgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space: 136400
Effective search space used: 136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
