CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCTATATCATACTAGAGAACCATGTGCACATGACAGAGTTCTG
AAAAGAGGATTTGCCTAATCACACCCTAATAAAGAAATGTTCTCAAGCAT
TTCTTCAATGGACTCAGGAATGACTCCTGTTCCCTTAGGCTTCTAAAAAT
GGTAGATTTAACACGATTAGATTTCTATAAGCACAGTCGGCAGATACAGT
CAAAAGTTACACCAGTTCTCATCAAAACTATTATAAAGATGGTGCCGAGT
CTGTTAAGTATCTCTATACTGTGAGGTTCTGGGAAAGTCATTTAGTGGCA
TTCTATTATGGTCTTTTTATTACCCCACCCAAATACACTTTTAGAAATAC
AAAGAGAGAAGTTTTACCTGCACCAGCAAGAATTTTAAATTTACATCCTT
AAGATGTCTGATTATTATAGTCAGTTCTGCTTAGTCACTATTGGAAAAAA
AAAAAAAAGACCACAGGAAAAAATTTAAATTTATTTAAAAGAAAAAAAGA
ACATGTAAATACCTCAGGATACTCTCTCCATCCAAAGTGGTCTCTACAGA
AGAATTTCCAAAATGTGTGGTAAATAGAGTTTGAATTACTACAGGGTGGT
GTAGACAGCCTTCGTAGTTGGTCAAATTCAGTTGTTTCAAATACAGTCAT
GGCATTCAAATCTGCCCAAAAGTCTTGTCCTCN

CCGATGAAGTGGGAGGCCTGGCGGCCGCCTGTTTCACACCTGGAGGTGAA
CTATAGAAGTTTCAAAAAAATTCAGGGTTACGTTCACAAAAATTCTTTTG
GTCTCTCATGTGTTTTAACCCCAGTAGAAATACTCTCTCACTTAATATTC
TGCCTGTGGTGCGAAAGCCTGGTCATAGACACAATGATCCCAGTGACTTC
GCACATCAAACCAACATGGCAGGGTCAAGCTGACCTCCCCGCCACCCAGG
GTCAAAGCCATACAGCTGAACAGTGTGTGCTTTGGCCTCACAGGCCAACA
CTCATAGACCTGGGTTTTATTTTTAGGTAACTACCTTGGCTGCCTTTCTT
TTAAAATTTTTTATACAAAGATTCTGCAAGTTTCCCTCCCTCAAATTGGA
GAGGCCCTGTAACTCACAATTAACTTTGAGTTATTATAAATTACAAATTT
GAAGCCTTGTTAAAAAGAAAATGAGGCTTCTGTTTAATTCCTTAGGAAGA
GGATTCACTCTAAGATTTACAGTTCGAAAAGTTGTAATATTGTGCTTGGA
ACACAGAGAACCAGTTATTAACTTCTTCCTCCTATTATAAATAATAACAG
CTCAGTCCAGGTTACCATGACCTCTGACAGATGTAGGAAACAAGTTATTT
TCTCCTCGTGATTACAGCACATTGCAAGACTCCTTGCCTTTTAATAAAAT
GCCCTGGTACTCTGAGTTTCCCTT

Query= MSMg01no289_o06.b1 MSMg01no289_o06.b1 CHROMAT_FILE:
MSMg01no289_o06.b1 PHD_FILE: MSMg01no289_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:17 2005
         (316 letters)



>mm_chr3_65350300_65351015
          Length = 716

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctctatatcatactagagaaccatgtgcacatgacagagttctgaaaagaggat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcctctatatcatactagagaaccatgtgcacatgacagagttctgaaaagaggat 457

                                                                       
Query: 65  ttgcctaatcacaccctaataaagaaatgttctcaagcatttcttcaatggactcaggaa 124
           |||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 456 ttgcctaaccacagcctaataaagaaatgtactcaagcatttcttcaatggactcaggaa 397

                                                                       
Query: 125 tgactcctgttcccttaggcttctaaaaatggtagatttaacacgattagatttctataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgactcctgttcccttaggcttctaaaaatggtagatttaacacgattagatttctataa 337

                                                                       
Query: 185 gcacagtcggcagatacagtcaaaagttacaccagttctcatcaaaactattataaagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gcacagtcggcagatacagtcaaaagttacaccagttctcatcaaaactattataaagat 277

                                                                       
Query: 245 ggtgccgagtctgttaagtatctctatactgtgaggttctgggaaagtcatttagtggca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ggtgccgagtctgttaagtatctctatactgtgaggttctgggaaagtcatttagtggca 217

                       
Query: 305 ttctattatggt 316
           ||||||||||||
Sbjct: 216 ttctattatggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no289_o06.g1 MSMg01no289_o06.g1 CHROMAT_FILE:
MSMg01no289_o06.g1 PHD_FILE: MSMg01no289_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:18 2005
         (229 letters)



>mm_chr3_65185199_65185827
          Length = 629

 Score =  443 bits (229), Expect = e-129
 Identities = 229/229 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttattataaattacaaatttgaagccttgttaaaaagaaaatgaggcttctgtttaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttattataaattacaaatttgaagccttgttaaaaagaaaatgaggcttctgtttaatt 260

                                                                       
Query: 61  ccttaggaagaggattcactctaagatttacagttcgaaaagttgtaatattgtgcttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttaggaagaggattcactctaagatttacagttcgaaaagttgtaatattgtgcttgg 320

                                                                       
Query: 121 aacacagagaaccagttattaacttcttcctcctattataaataataacagctcagtcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacacagagaaccagttattaacttcttcctcctattataaataataacagctcagtcca 380

                                                            
Query: 181 ggttaccatgacctctgacagatgtaggaaacaagttattttctcctcg 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttaccatgacctctgacagatgtaggaaacaagttattttctcctcg 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)