BAC Information

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BAC

Clone NameMSMg01-290A21
Chromosome3 (Build37)
Map Location 114,620,756 - 114,621,124
singlet/doubletsinglet
Overlap geneOlfm3
Upstream geneCol11a1, LOC100043220
Downstream geneEG546808, Edg1, Dph5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290A21.T7 (MSMg01no290_a21.b1)MSMg01-290A21.TJ (MSMg01no290_a21.g1)
ACCAG419440AG419441
length759760
length of high quality
(start - end)		676 (71 - 746)370 (388 - 757)
definitionCHROMAT_FILE: MSMg01no290_a21.b1 PHD_FILE: MSMg01no290_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:30 2005CHROMAT_FILE: MSMg01no290_a21.g1 PHD_FILE: MSMg01no290_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGG
AATTCCTAAATAATCTCCAAGTTTCCATTGACTTTATTTTAAGAATATAC
ACTCATTCAAAAGAAAACGATCCCATCTAAAAAACTTTTAACACAAAACT
TATCGTGTTTATAAGAAATGCAGGCACTGGGAGGGAGCAGAGACTGAGAG
AATAGCAAACCAAAAACCAGGCCAACTTGAGACCCATCCCATGGGCAAGC
ACCAATCCCTGACACTATTGATGATACTCTGTTATGTTTGCAGACAGAAA
CTGTTGTCCTCTGAGAGGCCCACCCAGCACCTGACCCAGAGAGACCCAGA
CACCCACAGTCAAACAGTGGATGGAGCTTGGGGTCTCTTATGGAAGAGTA
GGAGGAAGGATTGCAGACCTGAGAGGGATAGGAACTCCACAGGAAAACCA
ACAGAGACAACTAACCTGGACTCTTGGGTCTCAGAGAGTCTGAACCAACA
ACCAAAGAACATACACAGGCTGGACCTAGGCTTCCTCGCTCACATGTAAC
AGATGTGCAGCTTGGTCTTTATGTGGATATCAAACAACTGGAGCTGGAGC
TATCCCAAAAGCTGCTGCATATAATGTGGAATATGCTCTTCTTGCTGGGC
TGCCTTGTCTGGCCTCAGTGGGAGAGGATGCACCTAGCCTCACCAAGAAT
TGAAGTGCCAGGATGGGAAGATACCCAGGAGGGACCCCACTCACTCAGAG
GAGAGTGAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCCCATCATATTTACCAAAAA
TAAGCAAAATGAGTTGGTAGTAAAGACCAATCTTTGAAAGTTATGCTTCA
GTTTGAGAAGAATGTTCTAATTATATCTGACTAAGAGTAAATATTATATC
TCAGATGCTGTCTCATCTTGTAATGTGAGAAACATATACGAAGCAAGGGT
AAATGTTTGATATGATAGGATCTGTGTTTTTATTATATTAGTATATTTTA
CTTATAAGTGTATACATGTGTATGCATGTGAAAATCAGAGAAAAGCTCTA
GAGAGGAGCTTTTCTCCTTCTCTCTGTGAATATTGACCTTCAAACTCAGG
TATGGAGGCTTATGTGGTAAGAGCCTTTATCAGAGCCACTTTGGAATACA
GAATTGAAATCAATGGGTTCTCCCTGTCCCTTTATCAATGTGTCATTTGT
TTTAGTCTTGGTAGATGAAGGCAGCAGTAACATTATGGCAGTCACTCATT
TATCTTCCAAATGAATTTCCAAAAACTGATGAAATGGAAGAATACAGGAT
AAAACAGTCAAATATTTAACATAGCTTGAGGTCTCATTTGTTAATATTGT
TGTGTATATACATATACATATATAGTACATTTATAAAGATTTTATGATCA
TTTATCTCAAATTGTTTTGGAAATATTAGAAAGTTCTTATTTTCTGTTTT
AATTTANATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_a21.g1 MSMg01no290_a21.g1 CHROMAT_FILE:
MSMg01no290_a21.g1 PHD_FILE: MSMg01no290_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:30 2005
         (370 letters)



>mm_chr3_114620556_114621325
          Length = 770

 Score =  706 bits (365), Expect = 0.0
 Identities = 368/369 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcaaactcaggtatggaggcttatgtggtaagagcctttatcagagccactttggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cttcaaactcaggtatggaggcttatgtggtaagagcctttatcagagccactttggaat 510

                                                                       
Query: 61  acagaattgaaatcaatgggttctccctgtccctttatcaatgtgtcatttgttttagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 acagaattgaaatcaatgggttctccctgtccctttatcaatgtgtcatttgttttagtc 450

                                                                       
Query: 121 ttggtagatgaaggcagcagtaacattatggcagtcactcatttatcttccaaatgaatt 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 449 ttggtagatgaaggcagcagtaacattatgtcagtcactcatttatcttccaaatgaatt 390

                                                                       
Query: 181 tccaaaaactgatgaaatggaagaatacaggataaaacagtcaaatatttaacatagctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tccaaaaactgatgaaatggaagaatacaggataaaacagtcaaatatttaacatagctt 330

                                                                       
Query: 241 gaggtctcatttgttaatattgttgtgtatatacatatacatatatagtacatttataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gaggtctcatttgttaatattgttgtgtatatacatatacatatatagtacatttataaa 270

                                                                       
Query: 301 gattttatgatcatttatctcaaattgttttggaaatattagaaagttcttattttctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gattttatgatcatttatctcaaattgttttggaaatattagaaagttcttattttctgt 210

                    
Query: 361 tttaattta 369
           |||||||||
Sbjct: 209 tttaattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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