BAC Information

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BAC

Clone NameMSMg01-290D19
Chromosome3 (Build37)
Map Location 99,691,994 - 99,692,650
singlet/doubletsinglet
Overlap geneSpag17
Upstream geneHao3, LOC668557, Wars2, Tbx15, M6pr-ps
Downstream geneLOC623045, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290D19.T7 (MSMg01no290_d19.b1)MSMg01-290D19.TJ (MSMg01no290_d19.g1)
ACCAG419573AG419574
length732732
length of high quality
(start - end)
627 (48 - 674)658 (75 - 732)
definitionCHROMAT_FILE: MSMg01no290_d19.b1 PHD_FILE: MSMg01no290_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:43 2005CHROMAT_FILE: MSMg01no290_d19.g1 PHD_FILE: MSMg01no290_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAAATAGATTGGACCAGGAAAGAAATTCCTCCCATCATGTAAT
AGAAAAAAGAAAAAAAGAAACACAAAACAAAGAATATTAAAAGCAGTAAG
GGAAAAAGGTGAAGTAACAAAAAAAAAGGTAAAGAATTATAGGAAAACAC
ATACACAAAAAAAAGACCTATCAGCATTACACCAGACTTCTCACTAGAGA
CTATGAAAGATAGAGAATCCTGGGCAGGATATTCAGTGCAAACCTGGCAG
AGGTTCCCAAGGTATTCAGAGGACGCTCCATGCTGCAGGCCCCCTAGCAC
ACCCAGGACCTCGGGATCACTGGTGAGTGGAATGCAACATCAGTTCCGAA
GAATCCCGGAGGGTCTTGTGCCAGTAGGAACAGTGACAAAGGAACCCCAC
CTGACCAGAGGCTGGGATTTGTTCTGGTCAGGGTCAGCCCCACGCCATCT
TTGGGGTGAACCCAGCAGAGGGTGACAAGGTCCCCAGAGGACTCTCCATG
CTGTAGGCACCCTAGCATACCCAGGAGCTTGGGATCACTGATGAGCATGT
GGGCAGCAGAAGCAACAAAGCTTCTTGGACAGAGACCCTTTGGGCCTTCA
TCCTCAGCAGGGAGGCAGAGCTGAGACGCAGGCCCCTGGGTACCTTCCTT
GTCAGAGGAGAGTGAGCCTCCAGGAAGGGCTT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATGCTGCTGAACCACAGGCTTCGTG
GGGACACTGACTCTGTGTTTGTTAGTCTGGTGCTGCAAGCACAAAGCTGT
CATTTTCCTAGTGGAACTGAAAACCCCCAGGCACTATTTTTTCTTATAGT
TTAAAAACATGAAGTAATATTCGGCCTTCTTAACCCTGTTCAAATAATAT
AGGTTCAATAAATCTTCTATACTGGTAGATATAATTGCAAGTCAAAGTAA
TATGTCACTTTAGCTATGAAGGGAATGAGCTCAGCTTTCAGTTTGTTGGA
ATGCGTGCTTTCTTATTGTTGGGAGAAAATAAATATCTTCTATGTACTTC
CATATTTTGTTAGCTTGGTTTTGTGCCTGTAAAGGAGAAAATCCTATCAG
TTAATGCCTAAATGCATGTTCCAACCGTGAGAATAACCAACTCTGACTTT
GGCCAAAATGACTATGCTTGTGTAAAGTCCTTGTTCATTGGGTTTGGTAA
GGAGCATCACATGTGGTACGTCTGAGAATAAGGTATTGTTTTAATTCATT
AAGAGCTTGTTATTCTTTTACAAGTATATGTGTTTGAATGCACCTGTGCT
AATGTGTGTAACGAGGTGGGGCATGGAAGACAATGTAGTAATTCTCTGGT
ATTATGAAAGATAGTTTTCAAATTACCTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_d19.g1 MSMg01no290_d19.g1 CHROMAT_FILE:
MSMg01no290_d19.g1 PHD_FILE: MSMg01no290_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:43 2005
         (658 letters)



>mm_chr3_99691794_99692851
          Length = 1058

 Score = 1255 bits (649), Expect = 0.0
 Identities = 655/657 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgctgctgaaccacaggcttcgtggggacactgactctgtgtttgttagtctggtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgctgctgaaccacaggcttcgtggggacactgactctgtgtttgttagtctggtgct 260

                                                                       
Query: 61  gcaagcacaaagctgtcattttcctagtggaactgaaaacccccaggcactattttttct 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaagcacaaagctgtaattttcctagtggaactgaaaacccccaggcactattttttct 320

                                                                       
Query: 121 tatagtttaaaaacatgaagtaatattcggccttcttaaccctgttcaaataatataggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatagtttaaaaacatgaagtaatattcggccttcttaaccctgttcaaataatataggt 380

                                                                       
Query: 181 tcaataaatcttctatactggtagatataattgcaagtcaaagtaatatgtcactttagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaataaatcttctatactggtagatataattgcaagtcaaagtaatatgtcactttagc 440

                                                                       
Query: 241 tatgaagggaatgagctcagctttcagtttgttggaatgcgtgctttcttattgttggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgaagggaatgagctcagctttcagtttgttggaatgcgtgctttcttattgttggga 500

                                                                       
Query: 301 gaaaataaatatcttctatgtacttccatattttgttagcttggttttgtgcctgtaaag 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaataaatatcttctacgtacttccatattttgttagcttggttttgtgcctgtaaag 560

                                                                       
Query: 361 gagaaaatcctatcagttaatgcctaaatgcatgttccaaccgtgagaataaccaactct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaaaatcctatcagttaatgcctaaatgcatgttccaaccgtgagaataaccaactct 620

                                                                       
Query: 421 gactttggccaaaatgactatgcttgtgtaaagtccttgttcattgggtttggtaaggag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gactttggccaaaatgactatgcttgtgtaaagtccttgttcattgggtttggtaaggag 680

                                                                       
Query: 481 catcacatgtggtacgtctgagaataaggtattgttttaattcattaagagcttgttatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catcacatgtggtacgtctgagaataaggtattgttttaattcattaagagcttgttatt 740

                                                                       
Query: 541 cttttacaagtatatgtgtttgaatgcacctgtgctaatgtgtgtaacgaggtggggcat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttttacaagtatatgtgtttgaatgcacctgtgctaatgtgtgtaacgaggtggggcat 800

                                                                    
Query: 601 ggaagacaatgtagtaattctctggtattatgaaagatagttttcaaattacctcat 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggaagacaatgtagtaattctctggtattatgaaagatagttttcaaattacctcat 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)