BAC Information

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BAC

Clone NameMSMg01-290H13
Chromosome3 (Build37)
Map Location 119,592,461 - 119,592,754
singlet/doubletsinglet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290H13.T7 (MSMg01no290_h13.b1)MSMg01-290H13.TJ (MSMg01no290_h13.g1)
ACCAG419741AG419742
length717724
length of high quality
(start - end)
607 (49 - 655)289 (78 - 366)
definitionCHROMAT_FILE: MSMg01no290_h13.b1 PHD_FILE: MSMg01no290_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:02 2005CHROMAT_FILE: MSMg01no290_h13.g1 PHD_FILE: MSMg01no290_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTAGAGCTAATCAACACCTTCAATAAAGTGGCTAGATGAAAA
TTTAACTCAAAGAAATCAGTAGCTCTCCTCTCCTCTACATAAGTAATTAA
CAGGCTGAGAAAGAAGTTAGAAGACAGTACCCTTCAAAATAGCCTCAAAT
AATATAAAATACCTTGGTGTAACTCTAAACAAGCAAGTGAAAAACCTGCA
TGATAAGAACTTCAAGACTCTGAAGAAGGAAATTGAGGAAGATATCAGAT
GGAAAGACCTCCTATGCTCATGGATTAGTAGGATTTACATAGCAAAAATA
ACCATCTCATCAAAAGCAACCTACAGATTCAATGCAATTCCCATAAAAAT
TCCAACACAATTCTTCAGAGATCTTGAAAGAACAGTTCTCAACTTCATAT
GAAACAAACAGACAAAACAGAATAGCTAAAATGATCCTGAACAATAGAGA
ACTTCTGAGCTTATCAGTATCCTTGACCTCAAGCTACACTACATAATAAT
AATAAAACTGCATGGTGTTGATATAGAAATAGGCAGGTGGATCAATGGGA
TTGAATCAAAGACACGAAAATAAACCCACAAACCTATGGACACTTGATTT
TTGACCAAGAAGGCAAAACCATACAAAGGANAATAAAAGGAAGTCTCTTC
AACAAATGTGCTGGTCT
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTATTAAATACCAGAGCTCCAG
TAATTTTTATAATTCTCTTTTTTGCTTTTAAAAAAAATCTCAATATTTTT
CTTTTTACTTCATAGCACCAGCCAGAATCTTCCAGCTCACTTTTCTCAGG
TTTTGTTTTTGTTTTTATTGTTGTTTGCTTTTTTTTTTTTGTCTTTAGAT
ATGGCTTTATTGTGTTGCTTTGCAAGCCTTGGGCTCCTAAGCTCAAAGAA
TCTATCCTCCTGCCTCACCATCAAAAGGGTTGAGAGTCCCCATGTGTATG
AGTCTCTGTAGAAAGCTTCTACTAGAGAAAACTAAACGCAAGCTGACTTT
TCTCAGCTGAGTGTTGATTTTCTTGTTGGTTCCTCTCAATGCCAGGCAAT
GCTTAAGATCCACTCAGTGCTGGGTTTAGAAAGAGCAGAGTTTGTCCCTA
GCAACGTCATCGCATATAGAAACAAAACAGTCAAAGCTTTAACAAACTGA
AAAGCACAAATAGATTAAAACGTGATTGCACTCTAGAATAAAAGCTAACT
GCCAATCAATAATCAATCCATGGACTGTAAAGTAAACTAAGCAAATAAGA
TTTTTTTTCTGTTTGGTGAAAAGTAAGTCTAGTATAAGGGTATGTATATT
GATCAATTTCTTTCAATATCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_h13.g1 MSMg01no290_h13.g1 CHROMAT_FILE:
MSMg01no290_h13.g1 PHD_FILE: MSMg01no290_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:02 2005
         (289 letters)



>mm_chr3_119592432_119593120
          Length = 689

 Score =  538 bits (278), Expect = e-157
 Identities = 288/294 (97%), Gaps = 5/294 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attattaaataccagagctccagtaatttttataattctcttttttgcttttaaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attattaaataccagagctccagtaatttttataattctcttttttgcttttaaaaaaaa 264

                                                                       
Query: 61  tctcaatatttttctttttacttcatagcaccagccagaatcttccagctcacttttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tctcaatatttttctttttacttcatagcaccagccagaatcttccagctcacttttctc 204

                                                                       
Query: 121 aggttttgtttttgtttttattgttgtttgctttttttttttt-----gtctttagatat 175
           |||||||||||||||||||||||||||||||||||||||||||     ||||||||||||
Sbjct: 203 aggttttgtttttgtttttattgttgtttgctttttttttttttttttgtctttagatat 144

                                                                       
Query: 176 ggctttattgtgttgctttgcaagccttgggctcctaagctcaaagaatctatcctcctg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ggctttattgtgttgctttgcaagccttgggctcctaagctcaaagaatctatcctcctg 84

                                                                 
Query: 236 cctcaccatcaaaagggttgagagtccccatgtgtatgagtctctgtagaaagc 289
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 83  cctcaccatcaaaagggttgagagtccccatgtgtataagtctctgtagaaagc 30


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)